Last updated: 2022-01-09
Checks: 7 0
Knit directory: emlr_obs_v_XXX/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 8f64ff6 | jens-daniel-mueller | 2022-01-09 | test with cstar_tref_delta target |
| html | 013c119 | jens-daniel-mueller | 2022-01-08 | Build site. |
| Rmd | 0957510 | jens-daniel-mueller | 2022-01-08 | run without sal predictor |
| html | 984b603 | jens-daniel-mueller | 2022-01-06 | Build site. |
| Rmd | c810e00 | jens-daniel-mueller | 2022-01-06 | test tco2 target |
| html | 2dc49a1 | jens-daniel-mueller | 2022-01-06 | Build site. |
| Rmd | fcb5724 | jens-daniel-mueller | 2022-01-06 | test cstar_tco2 target |
| html | edc52d7 | jens-daniel-mueller | 2022-01-06 | Build site. |
| Rmd | 2267d0d | jens-daniel-mueller | 2022-01-06 | plot residuals of best models only - test |
| html | f9a6253 | jens-daniel-mueller | 2022-01-06 | Build site. |
| Rmd | 107e939 | jens-daniel-mueller | 2022-01-06 | cstar distributions plotted for all basins |
| html | 8d17c91 | jens-daniel-mueller | 2022-01-05 | Build site. |
| Rmd | 7be124a | jens-daniel-mueller | 2022-01-05 | test without Ovide data |
| html | dcb68b6 | jens-daniel-mueller | 2022-01-05 | Build site. |
| Rmd | 96bc26b | jens-daniel-mueller | 2022-01-05 | use cstar_talk as target variable without surface dcant |
| html | 719a008 | jens-daniel-mueller | 2022-01-05 | Build site. |
| html | 6450fc1 | jens-daniel-mueller | 2022-01-05 | Build site. |
| Rmd | 8abe741 | jens-daniel-mueller | 2022-01-05 | use cstar_phosphate as target variable |
| html | dfed6a1 | jens-daniel-mueller | 2022-01-05 | Build site. |
| Rmd | 4fcb41b | jens-daniel-mueller | 2022-01-05 | use cstar_talk as target variable |
| html | d5af0d7 | jens-daniel-mueller | 2022-01-04 | Build site. |
| Rmd | eb77910 | jens-daniel-mueller | 2022-01-04 | test revised definition of flagging exceptions and talk correction with cstar_tref target |
| html | f39db85 | jens-daniel-mueller | 2022-01-04 | Build site. |
| Rmd | fa5bfed | jens-daniel-mueller | 2022-01-04 | test revised definition of flagging exceptions and talk correction |
| html | 4fa937d | jens-daniel-mueller | 2022-01-03 | Build site. |
| Rmd | 3523f32 | jens-daniel-mueller | 2022-01-03 | tco2 target for 2004-2014 |
| html | da28869 | jens-daniel-mueller | 2021-12-23 | Build site. |
| Rmd | 3046f72 | jens-daniel-mueller | 2021-12-23 | rerun without log(phosphate) predictor, test tco2 target |
| html | 8900388 | jens-daniel-mueller | 2021-12-23 | Build site. |
| html | afdc482 | jens-daniel-mueller | 2021-12-21 | Build site. |
| Rmd | 027e55a | jens-daniel-mueller | 2021-12-21 | test run with cruises based flagging and filling conditions |
| html | 2fe7f8e | jens-daniel-mueller | 2021-12-08 | Build site. |
| Rmd | d68c75b | jens-daniel-mueller | 2021-12-08 | rerun with CANYON-B gap filling only on A16 in 2000s |
| html | a768c5d | jens-daniel-mueller | 2021-12-07 | Build site. |
| Rmd | 15b76e2 | jens-daniel-mueller | 2021-12-07 | rerun with CANYON-B gap filling only on A16 in 2000s |
| html | a7c514b | jens-daniel-mueller | 2021-12-07 | Build site. |
| html | bc1edbd | jens-daniel-mueller | 2021-12-07 | Build site. |
| Rmd | b018c0d | jens-daniel-mueller | 2021-12-07 | rerun with adjusted offset corrections |
| html | 8e82dee | jens-daniel-mueller | 2021-12-07 | Build site. |
| Rmd | f3819dc | jens-daniel-mueller | 2021-12-07 | applied adjustments to crossover offsets |
| html | 6cfccf7 | jens-daniel-mueller | 2021-12-06 | Build site. |
| Rmd | 099ac3f | jens-daniel-mueller | 2021-12-06 | test with CANYON-B prediction only from qc=1 O2 data, second decade |
| html | 3c60929 | jens-daniel-mueller | 2021-12-06 | Build site. |
| html | 3f76ee3 | jens-daniel-mueller | 2021-12-06 | Build site. |
| Rmd | 0904131 | jens-daniel-mueller | 2021-12-05 | rerun with IO corrections from crossover analysis for 1990s |
| html | 2ca1313 | jens-daniel-mueller | 2021-12-05 | Build site. |
| html | 7352ba1 | jens-daniel-mueller | 2021-12-04 | Build site. |
| Rmd | 459b7d9 | jens-daniel-mueller | 2021-12-04 | corrected filtering, plotted crossover data |
| html | d258523 | jens-daniel-mueller | 2021-12-02 | Build site. |
| Rmd | 6ece1d2 | jens-daniel-mueller | 2021-12-02 | plot only defined density slabs |
| html | 6a78608 | jens-daniel-mueller | 2021-12-02 | Build site. |
| Rmd | 3466773 | jens-daniel-mueller | 2021-12-02 | test with 2010s after implementing specifc IO 1990s tasks |
| html | a83a09b | jens-daniel-mueller | 2021-11-29 | Build site. |
| Rmd | 653f700 | jens-daniel-mueller | 2021-11-29 | test with input adjustment as inferred from crossover plots |
| html | 72c1041 | jens-daniel-mueller | 2021-11-23 | Build site. |
| Rmd | 971dcaf | jens-daniel-mueller | 2021-11-23 | test with strong adjustment of C* input data |
| html | 3eba8ac | jens-daniel-mueller | 2021-11-23 | Build site. |
| Rmd | 76b34b4 | jens-daniel-mueller | 2021-11-23 | test without adjustment of C* input data |
| html | ec18ee5 | jens-daniel-mueller | 2021-11-23 | Build site. |
| html | 4aa2702 | jens-daniel-mueller | 2021-11-23 | Build site. |
| Rmd | ffb6afb | jens-daniel-mueller | 2021-11-23 | adjustment of C* imput data implemented |
| Rmd | 1a0d1a8 | jens-daniel-mueller | 2021-11-23 | manual commit |
| html | 59cdf58 | jens-daniel-mueller | 2021-11-22 | Build site. |
| Rmd | 264c0cc | jens-daniel-mueller | 2021-11-22 | test with parameterized C* correction IO |
| Rmd | acf8f2a | jens-daniel-mueller | 2021-11-21 | manual commit |
| html | 3ae2dd1 | jens-daniel-mueller | 2021-11-21 | Build site. |
| html | 5b46219 | jens-daniel-mueller | 2021-11-21 | Build site. |
| html | 99fd72e | jens-daniel-mueller | 2021-11-21 | Build site. |
| html | 5016fc9 | jens-daniel-mueller | 2021-11-19 | Build site. |
| html | 6562075 | jens-daniel-mueller | 2021-11-19 | Build site. |
| html | 6b80483 | jens-daniel-mueller | 2021-11-19 | Build site. |
| html | 98d9e33 | jens-daniel-mueller | 2021-11-11 | Build site. |
| Rmd | 1633081 | jens-daniel-mueller | 2021-11-11 | rerun standard config with tracer analysis |
| html | 6891724 | jens-daniel-mueller | 2021-11-10 | Build site. |
| Rmd | 672471c | jens-daniel-mueller | 2021-11-10 | new C* slab distribution map |
| html | d3cb92d | jens-daniel-mueller | 2021-11-08 | Build site. |
| html | 3879a6d | jens-daniel-mueller | 2021-11-08 | Build site. |
| html | 0e032dc | jens-daniel-mueller | 2021-11-04 | Build site. |
| Rmd | 5ca91b7 | jens-daniel-mueller | 2021-11-04 | rerun standard |
| html | abcd28f | jens-daniel-mueller | 2021-11-02 | Build site. |
| Rmd | ac31857 | jens-daniel-mueller | 2021-11-02 | test w/o adjustment filter |
| html | 290c8fc | jens-daniel-mueller | 2021-11-02 | Build site. |
| Rmd | ce060fb | jens-daniel-mueller | 2021-11-02 | test adjustment filter |
| html | e02acc9 | jens-daniel-mueller | 2021-11-01 | Build site. |
| html | ceea35b | jens-daniel-mueller | 2021-11-01 | Build site. |
| Rmd | a4179fc | jens-daniel-mueller | 2021-11-01 | zonal mean section plots |
| html | 58da811 | jens-daniel-mueller | 2021-11-01 | Build site. |
| Rmd | 5cf3a1f | jens-daniel-mueller | 2021-11-01 | test adjustment removal |
| html | 2781a97 | jens-daniel-mueller | 2021-10-29 | Build site. |
| Rmd | 5f400fb | jens-daniel-mueller | 2021-10-29 | test adjustment removal |
| html | b7839e8 | jens-daniel-mueller | 2021-10-29 | Build site. |
| Rmd | 2a5fdf4 | jens-daniel-mueller | 2021-10-29 | added adjustment plots |
| html | 973192c | jens-daniel-mueller | 2021-10-28 | Build site. |
| Rmd | 0b14406 | jens-daniel-mueller | 2021-10-28 | added tracer plots and test without O2 data |
| html | f792cd8 | jens-daniel-mueller | 2021-10-27 | Build site. |
| Rmd | e111683 | jens-daniel-mueller | 2021-10-27 | test with tco2 target variable |
| html | 22750db | jens-daniel-mueller | 2021-10-27 | Build site. |
| Rmd | 8e66ca5 | jens-daniel-mueller | 2021-10-27 | test with Indian ocean lon bands |
| html | 3992e41 | jens-daniel-mueller | 2021-10-27 | Build site. |
| Rmd | 40fc487 | jens-daniel-mueller | 2021-10-27 | test with 5 Indian ocean lat bands |
| Rmd | 5732286 | jens-daniel-mueller | 2021-10-25 | manual commit |
| html | f9280c7 | jens-daniel-mueller | 2021-10-21 | Build site. |
| html | bfe90e6 | jens-daniel-mueller | 2021-10-21 | Build site. |
| Rmd | 0303580 | jens-daniel-mueller | 2021-10-21 | including 1989 in first era |
| html | 78a956e | jens-daniel-mueller | 2021-10-21 | Build site. |
| Rmd | 9f45187 | jens-daniel-mueller | 2021-10-20 | gruber 2019 time frame |
| html | 1ba14cf | jens-daniel-mueller | 2021-10-20 | Build site. |
| Rmd | 06bb915 | jens-daniel-mueller | 2021-10-20 | test without f flag 0 and 9 |
| html | dc0723b | jens-daniel-mueller | 2021-10-19 | Build site. |
| Rmd | d07f6a3 | jens-daniel-mueller | 2021-10-19 | merging depth of surface approach defined in params_local |
| html | cd0ebd8 | jens-daniel-mueller | 2021-10-18 | Build site. |
| Rmd | 6d2aad5 | jens-daniel-mueller | 2021-10-18 | merged surface and eMLR approach |
| html | 046c556 | jens-daniel-mueller | 2021-10-07 | Build site. |
| html | ac73c23 | jens-daniel-mueller | 2021-10-07 | Build site. |
| html | 0bd4ea2 | jens-daniel-mueller | 2021-10-07 | Build site. |
| Rmd | 6969c18 | jens-daniel-mueller | 2021-10-07 | check data distribution |
| html | 6969c18 | jens-daniel-mueller | 2021-10-07 | check data distribution |
| html | 596734b | jens-daniel-mueller | 2021-10-07 | Build site. |
| Rmd | e74b5cf | jens-daniel-mueller | 2021-10-07 | check data distribution |
| html | ac5c92d | jens-daniel-mueller | 2021-10-01 | Build site. |
| Rmd | 67a759e | jens-daniel-mueller | 2021-10-01 | code cleaning |
| html | 06afaca | jens-daniel-mueller | 2021-09-23 | Build site. |
| Rmd | ce93600 | jens-daniel-mueller | 2021-09-23 | test 1990 cutoff for first era |
| html | 410dd46 | jens-daniel-mueller | 2021-09-22 | Build site. |
| html | 5a36231 | jens-daniel-mueller | 2021-09-22 | Build site. |
| Rmd | ef591b4 | jens-daniel-mueller | 2021-09-22 | rerun with alternative rmse vif selection |
| html | c0bbbe4 | jens-daniel-mueller | 2021-09-22 | Build site. |
| Rmd | d69f5d5 | jens-daniel-mueller | 2021-09-22 | rerun with 7 predictors |
| html | 9eac969 | jens-daniel-mueller | 2021-08-30 | Build site. |
| Rmd | 905d7be | jens-daniel-mueller | 2021-08-30 | rerun with surface dic regression approach |
| html | 3a584b7 | jens-daniel-mueller | 2021-08-30 | Build site. |
| Rmd | ec2c293 | jens-daniel-mueller | 2021-08-30 | rerun with surface dic regression approach |
| html | 6e17588 | jens-daniel-mueller | 2021-08-24 | Build site. |
| html | deb425c | jens-daniel-mueller | 2021-08-24 | Build site. |
| Rmd | 7cb7410 | jens-daniel-mueller | 2021-08-24 | test surface estimates for pre 2000 era |
| html | 534854b | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 1a3562a | jens-daniel-mueller | 2021-08-19 | including gamma 26 slab, and all surface equi |
| html | 77f4ba7 | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 4a790f3 | jens-daniel-mueller | 2021-08-19 | test with gap filling after weak removal of outliers |
| html | ece96df | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | eb50c9e | jens-daniel-mueller | 2021-08-19 | test with gap filling after strong removal of outliers |
| html | 91d43c8 | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 699285b | jens-daniel-mueller | 2021-08-19 | replace cleaned data with canyon-B |
| html | d87504f | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 956cd67 | jens-daniel-mueller | 2021-08-19 | replace cleaned data with canyon-B |
| html | e7e5c45 | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 03cdf98 | jens-daniel-mueller | 2021-08-19 | replace cleaned data with canyon-B |
| html | dfee085 | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 94f19d8 | jens-daniel-mueller | 2021-08-19 | replace cleaned data with canyon-B |
| html | 27c99b8 | jens-daniel-mueller | 2021-08-19 | Build site. |
| Rmd | 4d618d3 | jens-daniel-mueller | 2021-08-19 | test with gap filling of removed outliers |
| html | a03f2f0 | jens-daniel-mueller | 2021-08-18 | Build site. |
| Rmd | 3fdf621 | jens-daniel-mueller | 2021-08-18 | test neighbouring trefs + auto slab correction |
| html | 9335b31 | jens-daniel-mueller | 2021-08-10 | Build site. |
| Rmd | 26d595c | jens-daniel-mueller | 2021-08-10 | with P, AIP basins |
| html | 9943b45 | jens-daniel-mueller | 2021-08-10 | Build site. |
| Rmd | 4b27dd8 | jens-daniel-mueller | 2021-08-10 | without P, AIP basins |
| html | 0b00a2b | jens-daniel-mueller | 2021-08-09 | Build site. |
| Rmd | e675869 | jens-daniel-mueller | 2021-08-09 | without P, AIP basins |
| html | 755c6b1 | jens-daniel-mueller | 2021-08-09 | Build site. |
| Rmd | dd6419c | jens-daniel-mueller | 2021-08-09 | revised global MLR cleaning |
| html | c65f2e3 | jens-daniel-mueller | 2021-08-09 | Build site. |
| Rmd | f0efda5 | jens-daniel-mueller | 2021-08-09 | revised canyon-b cleaning and created stats files |
| html | 70b290d | jens-daniel-mueller | 2021-08-09 | Build site. |
| Rmd | dee6b31 | jens-daniel-mueller | 2021-08-09 | revised canyon-b cleaning |
| html | cd8e0d5 | jens-daniel-mueller | 2021-08-06 | Build site. |
| html | 15773a0 | jens-daniel-mueller | 2021-08-06 | included calculation of revelle factor |
| html | da61d1a | jens-daniel-mueller | 2021-08-06 | Build site. |
| Rmd | 39bfacc | jens-daniel-mueller | 2021-08-06 | test with one global basin separation |
| html | 340d731 | jens-daniel-mueller | 2021-08-06 | Build site. |
| html | 71546e4 | jens-daniel-mueller | 2021-08-06 | test with stricter CANYON-B filtering |
| Rmd | 9486592 | jens-daniel-mueller | 2021-08-06 | test with stricter CANYON-B filtering |
| html | 29444a1 | jens-daniel-mueller | 2021-08-05 | Build site. |
| Rmd | 019702d | jens-daniel-mueller | 2021-08-05 | test with cruise and sample bases CANYON-B filtering |
| html | c4b789f | jens-daniel-mueller | 2021-08-05 | Build site. |
| Rmd | 8f73f84 | jens-daniel-mueller | 2021-08-05 | depth threshold for CANYON-B filtering |
| html | 42e80c0 | jens-daniel-mueller | 2021-08-04 | Build site. |
| Rmd | 76d6a79 | jens-daniel-mueller | 2021-08-04 | test with equilibrium in high lat |
| html | 48f6eed | jens-daniel-mueller | 2021-08-04 | Build site. |
| Rmd | 7499718 | jens-daniel-mueller | 2021-08-04 | test with eMLR to surface |
| html | 1c597ab | jens-daniel-mueller | 2021-08-04 | Build site. |
| html | 81a46a4 | jens-daniel-mueller | 2021-08-03 | Build site. |
| Rmd | fc0b511 | jens-daniel-mueller | 2021-08-03 | test with intermediate CANYON-B offset threshold |
| html | b88c61b | jens-daniel-mueller | 2021-08-03 | Build site. |
| Rmd | 02fbeae | jens-daniel-mueller | 2021-08-03 | test with strict CANYON-B offset threshold |
| html | 0f0d5e5 | jens-daniel-mueller | 2021-08-03 | Build site. |
| Rmd | 4d7bb5a | jens-daniel-mueller | 2021-08-03 | test rlm model fitting |
| html | a53656d | jens-daniel-mueller | 2021-08-03 | Build site. |
| Rmd | eb00453 | jens-daniel-mueller | 2021-08-03 | test with P predictors, and oxygen, but no P* |
| html | 88f7356 | jens-daniel-mueller | 2021-08-02 | Build site. |
| Rmd | 296fc33 | jens-daniel-mueller | 2021-08-02 | test without P predictors, but oxygen |
| html | d759279 | jens-daniel-mueller | 2021-08-02 | Build site. |
| Rmd | defe32c | jens-daniel-mueller | 2021-08-02 | test without P predictors, but oxygen |
| html | 127b801 | jens-daniel-mueller | 2021-07-24 | Build site. |
| Rmd | 414e9ff | jens-daniel-mueller | 2021-07-24 | test v_201 |
| html | 1f65ef1 | jens-daniel-mueller | 2021-07-23 | Build site. |
| Rmd | 56485c6 | jens-daniel-mueller | 2021-07-23 | rebuild: complete revision |
| html | 912d90e | jens-daniel-mueller | 2021-07-23 | Build site. |
| html | 2477316 | jens-daniel-mueller | 2021-07-23 | rebuild: surface dcant mapping seperate |
| html | c9ccc00 | jens-daniel-mueller | 2021-07-22 | Build site. |
| html | c75b2a0 | jens-daniel-mueller | 2021-07-22 | Build site. |
| Rmd | 7d6951d | jens-daniel-mueller | 2021-07-22 | surface dcant mapping seperate |
| html | 426b2df | jens-daniel-mueller | 2021-07-21 | Build site. |
| html | 78fe930 | jens-daniel-mueller | 2021-07-21 | Build site. |
| Rmd | ee0e941 | jens-daniel-mueller | 2021-07-21 | surface dcant mapping with preformed DIC |
| Rmd | 3ef0100 | jens-daniel-mueller | 2021-07-13 | complete revision |
| html | 971ce87 | jens-daniel-mueller | 2021-07-13 | Build site. |
| Rmd | 89d9fcb | jens-daniel-mueller | 2021-07-13 | complete revision |
| html | c18a8b1 | jens-daniel-mueller | 2021-07-09 | Build site. |
| Rmd | 795a3b0 | jens-daniel-mueller | 2021-07-09 | complete revision |
| html | 910d64a | jens-daniel-mueller | 2021-07-02 | Build site. |
| html | 1cbf907 | jens-daniel-mueller | 2021-07-02 | Build site. |
| Rmd | a2c1536 | jens-daniel-mueller | 2021-07-02 | testrun with CANYON-B NA filling |
| html | 749d84e | jens-daniel-mueller | 2021-06-30 | Build site. |
| Rmd | 7fa4dbd | jens-daniel-mueller | 2021-06-30 | added histogram |
| html | 955f5dc | jens-daniel-mueller | 2021-06-29 | Build site. |
| Rmd | b7747bd | jens-daniel-mueller | 2021-06-29 | update standard configuration |
| html | 9480f94 | jens-daniel-mueller | 2021-06-29 | Build site. |
| html | d054c39 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | ce91a31 | jens-daniel-mueller | 2021-06-24 | test with merged slabs |
| html | 87e2739 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | 6e94317 | jens-daniel-mueller | 2021-06-24 | test coarse grid rarefication |
| html | 4fcd066 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | ee48dee | jens-daniel-mueller | 2021-06-24 | test coarse grid rarefication |
| html | b960d93 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | 79ecdc5 | jens-daniel-mueller | 2021-06-24 | add observation grid to map |
| html | 00dcc97 | jens-daniel-mueller | 2021-06-23 | Build site. |
| Rmd | 891392a | jens-daniel-mueller | 2021-06-23 | revised bias labels |
| html | 3b6387f | jens-daniel-mueller | 2021-06-18 | Build site. |
| html | 3052a6c | jens-daniel-mueller | 2021-06-15 | Build site. |
| html | 3cb64bd | jens-daniel-mueller | 2021-06-15 | Build site. |
| html | c6b3da6 | jens-daniel-mueller | 2021-06-14 | Build site. |
| html | 48c73fc | jens-daniel-mueller | 2021-06-14 | Build site. |
| html | 439ee80 | jens-daniel-mueller | 2021-06-11 | Build site. |
| html | 33ffcab | jens-daniel-mueller | 2021-06-10 | Build site. |
| html | 7e1f407 | jens-daniel-mueller | 2021-06-10 | Build site. |
| html | 2cbe18c | jens-daniel-mueller | 2021-06-10 | added zonal mean section control plots |
| html | 69c79d0 | jens-daniel-mueller | 2021-06-08 | Build site. |
| html | 1772903 | jens-daniel-mueller | 2021-06-07 | Build site. |
| html | 594ed9a | jens-daniel-mueller | 2021-06-04 | Build site. |
| html | db7df0e | jens-daniel-mueller | 2021-06-04 | rebuild without overlapping eras |
| Rmd | 71f97a3 | jens-daniel-mueller | 2021-06-04 | rebuild without overlapping eras |
| html | 2edc791 | jens-daniel-mueller | 2021-06-04 | Build site. |
| html | 207339d | jens-daniel-mueller | 2021-06-03 | Build site. |
| html | 315710b | jens-daniel-mueller | 2021-06-03 | include anomalous changes |
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| Rmd | 12eeaa6 | jens-daniel-mueller | 2021-06-02 | test run with beta version of GLODAPv2.2021 |
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| Rmd | 1c2aff8 | jens-daniel-mueller | 2021-05-31 | test run with beta version of GLODAPv2.2021 |
| html | 4b7a5ee | jens-daniel-mueller | 2021-05-28 | Build site. |
| Rmd | a61014f | jens-daniel-mueller | 2021-05-28 | test run with cstar target variable |
| html | 12b455a | jens-daniel-mueller | 2021-05-27 | Build site. |
| Rmd | ee13efb | jens-daniel-mueller | 2021-05-27 | optional source of local params fully implemented |
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| html | 25bd183 | jens-daniel-mueller | 2021-05-26 | Build site. |
| Rmd | e2b3434 | jens-daniel-mueller | 2021-05-26 | generate seperate output |
| html | 5fe3035 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | 4c5302d | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | 189f362 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | f314fc7 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | cf773c5 | jens-daniel-mueller | 2021-05-26 | Build site. |
| Rmd | 5b0e29c | jens-daniel-mueller | 2021-05-26 | generate seperate output |
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| Rmd | 14a7aac | jens-daniel-mueller | 2021-05-20 | rerun overlapping eras |
| html | 7c56c39 | jens-daniel-mueller | 2021-05-19 | Build site. |
| html | 0de759e | jens-daniel-mueller | 2021-05-13 | Build site. |
| html | 0a84f2a | jens-daniel-mueller | 2021-05-12 | Build site. |
| html | 969e631 | jens-daniel-mueller | 2021-05-12 | Build site. |
| html | d2a83bc | jens-daniel-mueller | 2021-04-16 | Build site. |
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| Rmd | d6b0b34 | jens-daniel-mueller | 2021-04-16 | use consistent tref |
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| html | 50290e8 | jens-daniel-mueller | 2021-04-16 | overlapping eras |
| Rmd | 934e795 | jens-daniel-mueller | 2021-04-16 | overlapping eras |
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| Rmd | f70f4dc | jens-daniel-mueller | 2021-04-16 | regular eras |
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| Rmd | 0b33708 | jens-daniel-mueller | 2021-04-16 | deep Pacific slabs |
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| Rmd | 7084d27 | jens-daniel-mueller | 2021-04-15 | overlapping breakpoints |
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| Rmd | 3ab8145 | jens-daniel-mueller | 2021-04-14 | 2008 breakpoint |
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| Rmd | e76af46 | jens-daniel-mueller | 2021-04-14 | 2 basins, high VIF |
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| Rmd | 6fcc01e | jens-daniel-mueller | 2021-04-14 | AIP basins, low VIF |
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| Rmd | fdb5a55 | jens-daniel-mueller | 2021-04-13 | deeper slabs in Ind_Pac, higher VIF |
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| Rmd | 80e1ee3 | jens-daniel-mueller | 2021-04-13 | rerun post-2000 with model data |
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| html | a79ca2c | jens-daniel-mueller | 2021-04-09 | included model data |
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| html | 03b6009 | jens-daniel-mueller | 2021-03-23 | removed before copying template |
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| Rmd | 2021931 | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
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| Rmd | 64b4756 | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
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| Rmd | 8a3a9dd | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
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| Rmd | b697e7a | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
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| Rmd | 6601b92 | jens-daniel-mueller | 2021-03-23 | rerun w/o post 2012 era |
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| Rmd | 30ed6c6 | jens-daniel-mueller | 2021-03-21 | rerun with stronger vif threshold |
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| Rmd | 2b99ba0 | jens-daniel-mueller | 2021-03-20 | included vif removel option |
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| Rmd | fdd3c0a | jens-daniel-mueller | 2021-03-20 | re-run standard slabs |
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| Rmd | a9930ea | jens-daniel-mueller | 2021-03-16 | one thick slab |
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| Rmd | 7e351c0 | jens-daniel-mueller | 2021-03-15 | re-run with quality filters and new eras |
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| Rmd | 381eb8e | jens-daniel-mueller | 2021-03-14 | re-run with quality filters |
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| Rmd | e3dde84 | jens-daniel-mueller | 2021-03-14 | test without filtering |
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| Rmd | 7a953b4 | jens-daniel-mueller | 2021-03-11 | test with weak filtering |
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| Rmd | f568b8e | jens-daniel-mueller | 2021-03-11 | cleaned cstar filtering |
| html | 6482ed7 | jens-daniel-mueller | 2021-03-11 | Build site. |
| Rmd | 0ad56e3 | jens-daniel-mueller | 2021-03-11 | cleaned filtering based on comparison to CANYON-B |
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| html | 52a5ea4 | jens-daniel-mueller | 2021-03-10 | Build site. |
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| html | 6c0bec6 | jens-daniel-mueller | 2021-03-05 | Build site. |
| html | 3c2ec33 | jens-daniel-mueller | 2021-03-05 | Build site. |
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| html | 7b672f7 | jens-daniel-mueller | 2021-01-11 | Build site. |
| Rmd | ba7cb46 | jens-daniel-mueller | 2021-01-11 | run sensitivity test |
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| Rmd | 0ad30ba | jens-daniel-mueller | 2021-01-07 | removed GLODAP gamma filter, target variable mapped by eras+era |
| Rmd | a8c4dce | jens-daniel-mueller | 2020-12-23 | manual activation of A16 switch |
| Rmd | cfef575 | jens-daniel-mueller | 2020-12-23 | Option to select era shift of A16 cruise |
| Rmd | 31b2f90 | jens-daniel-mueller | 2020-12-23 | corrected predictor label |
| Rmd | f489bc9 | jens-daniel-mueller | 2020-12-23 | switched back to regular predictors |
| html | 318609d | jens-daniel-mueller | 2020-12-23 | adapted more variable predictor selection |
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| Rmd | d3ad704 | jens-daniel-mueller | 2020-12-23 | test 106 |
| Rmd | 16fa143 | jens-daniel-mueller | 2020-12-23 | changed standard config parameters in template |
| html | 0aa2b50 | jens-daniel-mueller | 2020-12-23 | remove html before duplication |
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| html | 02f0ee9 | jens-daniel-mueller | 2020-12-18 | cleaned up for copying template |
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| html | 5d452fe | jens-daniel-mueller | 2020-12-18 | Build site. |
| Rmd | ca65bf5 | jens-daniel-mueller | 2020-12-18 | rebuild after final cleaning |
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| html | d397028 | jens-daniel-mueller | 2020-12-18 | Build site. |
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| html | a84ff3c | jens-daniel-mueller | 2020-12-17 | Build site. |
| Rmd | 40369db | jens-daniel-mueller | 2020-12-17 | model selection criterion added |
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| html | e4ca289 | jens-daniel-mueller | 2020-12-16 | Build site. |
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| html | 7a9a4cb | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | d234226 | jens-daniel-mueller | 2020-12-15 | rebuild with cstar_tref |
| html | 61b263c | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | 48e9693 | jens-daniel-mueller | 2020-12-15 | test with target variable tco2 |
| html | 4d612dd | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | e7e5ff1 | jens-daniel-mueller | 2020-12-15 | rebuild with eMLR target variable selection |
| html | 953caf3 | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | 97dd0d6 | jens-daniel-mueller | 2020-12-14 | enabled auto path creation |
| html | 42daf5c | jens-daniel-mueller | 2020-12-14 | Build site. |
| html | 5cc68e2 | jens-daniel-mueller | 2020-12-14 | Build site. |
| Rmd | 00de567 | jens-daniel-mueller | 2020-12-14 | rebuild with new path |
| html | 984697e | jens-daniel-mueller | 2020-12-12 | Build site. |
| Rmd | 7648dbc | jens-daniel-mueller | 2020-12-12 | test 3 basins for MLR |
| html | 3ebff89 | jens-daniel-mueller | 2020-12-12 | Build site. |
| Rmd | a1aaa71 | jens-daniel-mueller | 2020-12-12 | selectable basinmask, rebuild |
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| html | c8acfcb | jens-daniel-mueller | 2020-12-11 | Build site. |
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| Rmd | 64b795c | jens-daniel-mueller | 2020-12-09 | added histograms after data preparation |
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| Rmd | 71c63b0 | jens-daniel-mueller | 2020-12-09 | rerun with variable predictor assignment |
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| Rmd | 6f8a606 | jens-daniel-mueller | 2020-12-07 | rerun standard config |
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| Rmd | a4ec6a0 | jens-daniel-mueller | 2020-12-07 | Keppler comparison run |
| html | 70bf1a5 | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | fe4f9b0 | jens-daniel-mueller | 2020-12-07 | run standard config |
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| Rmd | 263f926 | jens-daniel-mueller | 2020-12-07 | run with qc flag alos 0 |
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| Rmd | 33b1973 | jens-daniel-mueller | 2020-12-07 | run with WOCE flag 2 only |
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| Rmd | 992ba15 | jens-daniel-mueller | 2020-12-03 | rebuild with variable inventory depth |
| html | 090e4d5 | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | 37e9dac | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | 7c25f7a | jens-daniel-mueller | 2020-12-02 | Build site. |
| Rmd | 5ffd065 | jens-daniel-mueller | 2020-12-02 | rebuild with nice era labels |
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| Rmd | fb05352 | jens-daniel-mueller | 2020-12-02 | editorial changes |
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| Rmd | 8f3d29d | jens-daniel-mueller | 2020-12-02 | code cleaning and commenting |
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| Rmd | 7a4b015 | jens-daniel-mueller | 2020-11-30 | first rebuild on ETH server |
The following local parametrisations (i.e. relevant for this sensitivity run) were defined to run the analysis:
# neutral density thresholds to cut the Atlantic ocean into slabs
slabs_Atl <-
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
# neutral density thresholds to cut the Indo-Pacific ocean into slabs
slabs_Ind_Pac <-
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
Inf)
# Predictors for MLR model
MLR_predictors <- c(
# "sal",
"temp",
"aou",
"oxygen",
"phosphate",
"nitrate",
"silicate")
# # Transformed predictors for MLR model
# MLR_predictors_trans <- c(
# "log(phosphate)")
params_local <-
lst(
# ID of current sensitivity run
Version_ID = "v_XXX",
# GLODAP version used
GLODAPv2_version = "2021",
# f flags accepted for GLODAP data
flag_f = c(2,9),
# qc flags accepted for GLODAP data
flag_qc = c(1),
# cruises for which calculated tco2 data are accepted
# even if generally f-flag = 0 data are excluded
cruises_tco2_calc = c(
# "35TH20040604",
# "29AH20160617"
),
# cruises for which calculated talk data are accepted
# even if generally f-flag = 0 data are excluded
cruises_talk_calc = c(
"06MT19900123",
"316N19920502",
"316N19921006"
),
# additive talk correction for calculate talk data
talk_calc_corr = 3,
# cruises for which data with qc = 0 flag are accepted
# even if generally qc-flag = 0 data are excluded
cruises_qc_flag = c(
"31DS19940126"
),
# Shallowest depth for data to be included in MLR fitting
depth_min = 100,
# Depth to extend the surface dcant estimate in mapping
depth_mapping = 200,
# Shallowest water depth for data to be included in MLR fitting
bottomdepth_min = 0,
# Lowest neutral density to map dcant with eMLR approach
gamma_min = Inf,
# CANYON-B offset threshold
# (factor applied to standard deviation of all cruise offsets)
CANYON_B_cruise_mean = 2,
# (factor applied to median of standard deviations of all cruise offsets)
CANYON_B_sample_SD = 3,
# minimum sampling depth to apply CANYON-B offset threshold
CANYON_B_depth = 0,
# offset correction for cruises expodcode 316N199XXXXX
cstar_corr_316N199 = 0,
# offset correction for cruises expodcode 316N199XXXXX
phosphate_corr_316N199 = 1,
# offset correction for cruises expodcode 316N199XXXXX
talk_corr_316N199 = -4,
# offset correction for cruises expodcode 316N199XXXXX
tco2_corr_316N199 = 2.5,
# threshold for the cruise rmse from a global MLR model of the target variable
target_global_rmse_max = 50,
# start years for eras
era_start = c(2000, 2010),
# end years for eras
era_end = c(2009, 2019),
# manually define tref1, set to NULL to use median year
tref1 = 2004,
# manually define tref2, set to NULL to use median year
tref2 = 2014,
# ID for basins for MLR fits (options: "2", "AIP", "5", "SO")
MLR_basins = "AIP",
# gap filling of NA values in GLODAP
gap_filling = "CANYON-B",
# cruises for which phosphate gaps should be filled with CANYON-B
cruises_phosphate_gap_fill = c("33MW19930704",
"33RO20030604",
"33RO20050111",
"33RO19980123"),
# cruises for which talk gaps should be filled with CANYON-B
cruises_talk_gap_fill = c("06AQ19980328"),
# cruise adjustment thresholds, not applied when Inf
cruise_adjustment_relative = Inf, # levels as absolute factor -1
cruise_adjustment_absolute = Inf, # levels in absolute µM
# SD of deep water C* values
cstar_deep_sd = Inf,
# rarefication approach
# options: "coarse_grid" (horizontal 5x5 grid);
# "reoccupation" (only 1x1 grids sampled in both eras)
rarefication = "coarse_grid",
# rarefication approach threshold
rarefication_threshold = 50,
# Select the target variable for MLR, either "tco2", "cstar" or "cstar_tref"
MLR_target = "cstar_tref_delta",
# see above
MLR_predictors = MLR_predictors,
# # see above
# MLR_predictors_trans = MLR_predictors_trans,
# Maxmimum number of MLR predictors
MLR_predictors_max = 7,
# Minimum number of MLR predictors
MLR_predictors_min = 3,
# Total number of MLR fits taken into account
MLR_number = 10,
# function used to fit linear regression models: "lm", "rlm"
MLR_function = "lm",
# Maximum VIF of fitted MLR models to be included
vif_max = 500,
# Criterion to select best MLR fits, either "rmse" or "aic"
MLR_criterion = "rmse",
# see above
slabs_Atl = slabs_Atl,
# see above
slabs_Ind_Pac = slabs_Ind_Pac,
# nutrient for cstar calculation
cstar_nutrient = "phosphate",
# Stoichiometric ratio of C to P
rCP = 117,
# Stoichiometric ratio of N to P
rNP = 16,
# Stoichiometric ratio of P to O (PO4* calculation)
rPO = 170,
# Offset P to O (PO4* calculation)
rPO_offset = 1.95,
# Preindustrial atmospheric pCO2
preind_atm_pCO2 = 280,
# index of slabs to be plotted
plot_slabs = as.factor(c("(26,26.5]", "(27.5,27.75]")),
# generate a high number of diagnostic plots while running the analysis (y/n)
plot_all_figures = "n"
)# neutral density thresholds to cut the Atlantic ocean into slabs
slabs_Atl <- lst(
slabs_Atl =
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
# slabs_Atl =
# c(-Inf,
# 26.50,
# 27.00,
# 27.50,
# 27.85,
# 28.05,
# 28.15,
# Inf
# )
)
# neutral density thresholds to cut the Indo-Pacific ocean into slabs
slabs_Ind_Pac <- lst(
slabs_Ind_Pac =
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
Inf
)
# slabs_Ind_Pac =
# c(
# -Inf,
# 26.50,
# 27.00,
# 27.50,
# 27.85,
# 28.05,
# Inf
# )
)
# Predictors for MLR model
MLR_predictors <- lst(
MLR_predictors = c("sal", "temp", "aou", "oxygen", "phosphate", "nitrate", "silicate"),
MLR_predictors = c("temp", "aou", "oxygen", "phosphate", "nitrate", "silicate"),
MLR_predictors = c("sal", "aou", "oxygen", "phosphate", "nitrate", "silicate"),
MLR_predictors = c("sal", "temp", "oxygen", "phosphate", "nitrate", "silicate"),
MLR_predictors = c("sal", "temp", "aou", "phosphate", "nitrate", "silicate"),
MLR_predictors = c("sal", "temp", "aou", "oxygen", "nitrate", "silicate"),
MLR_predictors = c("sal", "temp", "aou", "oxygen", "phosphate", "silicate"),
MLR_predictors = c("sal", "temp", "aou", "oxygen", "phosphate", "nitrate")
)
# GLODAP version used
GLODAPv2_version = "2021"
# f flags accepted for GLODAP data
flag_f = lst(# flag_f = c(0, 2, 9),
flag_f = c(2, 9)
)
# qc flags accepted for GLODAP data
flag_qc = lst(# flag_qc = c(0, 1),
flag_qc = c(1)
)
# cruises for which calculated tco2 data are accepted
# even if generally f-flag = 0 data are excluded
cruises_tco2_calc = lst(cruises_tco2_calc =
c(
# "35TH20040604",
# "29AH20160617"
))
# cruises for which calculated talk data are accepted
# even if generally f-flag = 0 data are excluded
cruises_talk_calc = lst(cruises_talk_calc = c("06MT19900123",
"316N19920502",
"316N19921006"))
# additive talk correction for calculate talk data
talk_calc_corr = lst(talk_calc_corr = 3)
# cruises for which data with qc = 0 flag are accepted
# even if generally qc-flag = 0 data are excluded
cruises_qc_flag = lst(cruises_qc_flag = c("31DS19940126"))
# Shallowest depth for data to be included in MLR fitting
depth_min = lst(depth_min = 100
# depth_min = 150
)
# Depth to extend the surface dcant estimate in mapping
depth_mapping = lst(
depth_mapping = 200
)
# Shallowest water depth for data to be included in MLR fitting
bottomdepth_min = 0
# Lowest neutral density to map dcant with eMLR approach
gamma_min = lst(
# gamma_min = 26,
gamma_min = Inf
)
# CANYON-B offset threshold
# (factor applied to standard deviation of all cruise offsets)
CANYON_B_cruise_mean = lst(
CANYON_B_cruise_mean = 2
# CANYON_B_cruise_mean = 3,
# CANYON_B_cruise_mean = 1
)
# (factor applied to median of standard deviations of all cruise offsets)
CANYON_B_sample_SD = lst(
CANYON_B_sample_SD = 4
# CANYON_B_sample_SD = 3,
# CANYON_B_sample_SD = 2,
# CANYON_B_sample_SD = 1
)
# minimum sampling depth to apply CANYON-B offset threshold
CANYON_B_depth = 0
# offset correction for cruises expodcode 316N199XXXXX
phosphate_corr_316N199 = 1
# offset correction for cruises expodcode 316N199XXXXX
talk_corr_316N199 = -4
# offset correction for cruises expodcode 316N199XXXXX
tco2_corr_316N199 = 2.5
# offset correction for cruises expodcode 316N199XXXXX
cstar_corr_316N199 = lst(
cstar_corr_316N199 = 0
# cstar_corr_316N199 = 2,
# cstar_corr_316N199 = 4,
# cstar_corr_316N199 = 6,
# cstar_corr_316N199 = 8
)
# threshold for the cruise rmse from a global MLR model of the target variable
target_global_rmse_max = lst(
target_global_rmse_max = 30
# target_global_rmse_max = 30,
# target_global_rmse_max = 20,
# target_global_rmse_max = 10
)
# start years for eras
era_start = lst(era_start = c(1989, 2000))
era_start = lst(era_start = c(1989, 2010))
era_start = lst(era_start = c(2000, 2010))
# end years for eras
era_end = lst(era_end = c(1999, 2009))
era_end = lst(era_end = c(1999, 2019))
era_end = lst(era_end = c(2009, 2019))
# manually define tref1, set to NULL to use median year
tref1 = 1994
tref1 = 2004
# manually define tref2, set to NULL to use median year
tref2 = 2004
tref2 = 2014
# ID for basins for MLR fits (options: "2", "AIP", "5", "SO")
MLR_basins = lst(
# MLR_basins = "1",
# MLR_basins = "2",
MLR_basins = "AIP"
# MLR_basins = "IO_test_lon",
# MLR_basins = "5",
# MLR_basins = "SO",
# MLR_basins = "SO_5",
# MLR_basins = "SO_AIP",
# MLR_basins = "SO_2"
)
# gap filling of NA values in GLODAP
gap_filling = lst(
gap_filling = "CANYON-B"
# gap_filling = "none"
)
# cruises for which phosphate gaps should be filled with CANYON-B
cruises_phosphate_gap_fill = lst(
cruises_phosphate_gap_fill = c(
"33MW19930704",
"33RO20030604",
"33RO20050111",
"33RO19980123"
)
)
# cruises for which talk gaps should be filled with CANYON-B
cruises_talk_gap_fill = lst(cruises_talk_gap_fill = c("06AQ19980328"))
# cruise adjustment thresholds, not applied when Inf
cruise_adjustment_relative = Inf # levels as absolute factor -1
cruise_adjustment_absolute = Inf # levels in absolute µM
# cstar deep water scatter per station
cstar_deep_sd = lst(
# cstar_deep_sd = 0.1,
# cstar_deep_sd = 0.5,
# cstar_deep_sd = 1,
# cstar_deep_sd = 2,
# cstar_deep_sd = 5,
# cstar_deep_sd = 10,
cstar_deep_sd = Inf
)
# rarefication approach
rarefication = "coarse_grid"
# rarefication approach threshold
rarefication_threshold = lst(
# rarefication_threshold = 10,
# rarefication_threshold = 20,
# rarefication_threshold = 35,
rarefication_threshold = 50
)
# Select the target variable for MLR, either "tco2", "cstar" or "cstar_tref"
MLR_target = lst(
MLR_target = "cstar_tref"
# MLR_target = "cstar",
# MLR_target = "cstar_tco2",
# MLR_target = "cstar_talk",
# MLR_target = "cstar_phosphate"
)
# Maxmimum number of MLR predictors
MLR_predictors_max = 7
# Minimum number of MLR predictors
MLR_predictors_min = 3
# Total number of MLR fits taken into account
MLR_number = 10
# function used to fit linear regression models: "lm", "rlm"
MLR_function = "lm"
# Maximum VIF of fitted MLR models to be included
vif_max = lst(
# vif_max = Inf,
# vif_max = 1000,
vif_max = 500#,
# vif_max = 100,
# vif_max = 10
)
# Criterion to select best MLR fits, either "rmse" or "aic"
MLR_criterion = "rmse"
# nutrient for cstar calculation
cstar_nutrient = "phosphate"
# Stoichiometric ratio of C to P
rCP = 117
# Stoichiometric ratio of N to P
rNP = 16
# Stoichiometric ratio of P to O (PO4* calculation)
rPO = 170
# Offset P to O (PO4* calculation)
rPO_offset = 1.95
# Preindustrial atmospheric pCO2
preind_atm_pCO2 = 280
# index of slabs to be plotted
plot_slabs = lst(
plot_slabs = as.factor(c("(26,26.5]", "(27.5,27.75]"))
)
plot_all_figures = "n"
params_local_all <-
lst(
slabs_Atl,
slabs_Ind_Pac,
MLR_predictors,
GLODAPv2_version,
flag_f,
flag_qc,
cruises_tco2_calc,
cruises_talk_calc,
talk_calc_corr,
cruises_qc_flag,
depth_min,
depth_mapping,
bottomdepth_min,
gamma_min,
CANYON_B_cruise_mean,
CANYON_B_sample_SD,
CANYON_B_depth,
phosphate_corr_316N199,
talk_corr_316N199,
tco2_corr_316N199,
cstar_corr_316N199,
target_global_rmse_max,
era_start,
era_end,
tref1,
tref2,
MLR_basins,
gap_filling,
cruises_phosphate_gap_fill,
cruises_talk_gap_fill,
cruise_adjustment_relative,
cruise_adjustment_absolute,
cstar_deep_sd,
rarefication,
rarefication_threshold,
MLR_target,
MLR_predictors_max,
MLR_predictors_min,
MLR_number,
MLR_function,
vif_max,
MLR_criterion,
cstar_nutrient,
rCP,
rNP,
rPO,
rPO_offset,
preind_atm_pCO2,
plot_slabs,
plot_all_figures
) %>%
cross()
path_root <- "/nfs/kryo/work/jenmueller/emlr_cant/observations"
for (i in 1:length(params_local_all)) {
# i <- 5
Version_ID <- sprintf("v_3p%02d", i)
params_local <- nth(params_local_all, i)
params_local$Version_ID <- Version_ID
# create folder structure
dir.create(paste(path_root, Version_ID, sep = "/"))
dir.create(paste(path_root, Version_ID, "data", sep = "/"))
dir.create(paste(path_root, Version_ID, "website", sep = "/"))
dir.create(paste(path_root, Version_ID, "figures", sep = "/"))
dir.create(paste(path_root, Version_ID, "figures/GLODAPv2_2020_subsetting",sep = "/"))
dir.create(paste(path_root, Version_ID, "figures/Cant_model_sections", sep = "/"))
dir.create(paste(path_root, Version_ID, "figures/Cruise_sections_histograms", sep = "/"))
dir.create(paste(path_root, Version_ID, "figures/eMLR_diagnostics", sep = "/"))
dir.create(paste(path_root, Version_ID, "figures/Observations_correlation", sep = "/"))
# write params_local files
params_local %>%
write_rds(file = paste(
path_root,
Version_ID,
"data",
"params_local.rds",
sep = "/"
))
params_local %>%
capture.output(file = paste(
path_root,
Version_ID,
"data",
"params_local.txt",
sep = "/"
))
}Folders for each new sensitivity run are automatically created.
Parametrisation criteria are locally stored and used throughout this sensitivity case.
params_local %>%
write_rds(here::here("data/auxillary",
"params_local.rds"))
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3
Matrix products: default
BLAS: /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.0 stringr_1.4.0 dplyr_1.0.5 purrr_0.3.4
[5] readr_1.4.0 tidyr_1.1.3 tibble_3.1.3 ggplot2_3.3.5
[9] tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.25 bslib_0.2.5.1 haven_2.3.1
[5] colorspace_2.0-2 vctrs_0.3.8 generics_0.1.0 htmltools_0.5.1.1
[9] yaml_2.2.1 utf8_1.1.4 blob_1.2.1 rlang_0.4.11
[13] jquerylib_0.1.4 later_1.2.0 pillar_1.6.2 withr_2.3.0
[17] glue_1.4.2 DBI_1.1.0 dbplyr_1.4.4 readxl_1.3.1
[21] modelr_0.1.8 lifecycle_1.0.0 cellranger_1.1.0 munsell_0.5.0
[25] gtable_0.3.0 rvest_0.3.6 evaluate_0.14 knitr_1.33
[29] httpuv_1.5.4 fansi_0.4.1 broom_0.7.9 Rcpp_1.0.5
[33] promises_1.1.1 backports_1.1.10 scales_1.1.1 jsonlite_1.7.1
[37] fs_1.5.0 hms_0.5.3 digest_0.6.27 stringi_1.5.3
[41] rprojroot_2.0.2 grid_4.0.3 here_0.1 cli_3.0.1
[45] tools_4.0.3 magrittr_1.5 sass_0.4.0 crayon_1.3.4
[49] whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.2 xml2_1.3.2
[53] reprex_0.3.0 lubridate_1.7.9 httr_1.4.2 assertthat_0.2.1
[57] rmarkdown_2.10 rstudioapi_0.13 R6_2.5.0 git2r_0.27.1
[61] compiler_4.0.3