Last updated: 2021-11-02

Checks: 7 0

Knit directory: 2019-feature-selection/

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File Version Author Date Message
Rmd 547c3de pat-s 2021-11-02 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
Rmd b2df0fb pat-s 2021-11-02 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html d9e2d9c pat-s 2021-04-12 Build site.
Rmd d83e8cf pat-s 2021-04-12 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html af4e9aa pat-s 2021-04-05 Build site.
Rmd ab68766 pat-s 2021-04-01 restore old observation counts
html 5820967 pat-s 2021-03-30 Build site.
Rmd 67ae6cf pat-s 2021-03-30 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
Rmd 4d87520 pat-s 2021-03-29 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
Rmd c46d8bb pat-s 2021-03-11 object name fixes
Rmd 632ad43 pat-s 2021-03-07 eda: 95% for PCA instead of 90%
html b1e5802 pat-s 2021-02-10 Build site.
Rmd 250c984 pat-s 2021-02-10 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html 8dc0133 pat-s 2021-02-09 Build site.
Rmd bb8195d pat-s 2021-02-09 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html fd3acb5 pat-s 2020-12-26 Build site.
Rmd 82ed31e pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html 06f8310 pat-s 2020-12-26 Build site.
Rmd d690cc0 pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html b65821e pat-s 2020-12-26 Build site.
Rmd 97711ce pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html 0328965 pat-s 2020-12-26 Build site.
Rmd 0c854fe pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html 875226f pat-s 2020-12-26 Build site.
Rmd e8b7487 pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html ea4e83e pat-s 2020-12-26 Build site.
Rmd 084bb6d pat-s 2020-12-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html a016ad6 pat-s 2020-12-25 Build site.
Rmd 1143bc1 pat-s 2020-12-25 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
html a953299 pat-s 2020-08-12 Build site.
html 8b5e422 pat-s 2020-08-05 Build site.
html 2be34b0 pat-s 2020-03-22 Build site.
Rmd f40ac65 pat-s 2020-03-22 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE)
Rmd 8794c9d pat-s 2020-03-03 remove copy_figures() from eda.Rmd
Rmd 2e9f8a1 pat-s 2020-02-24 do everything for buffer of 2m and no buffer
html 3cab82e pat-s 2020-02-15 Build site.
Rmd 5b2fa27 pat-s 2020-02-15 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose =
html f2c521e pat-s 2020-02-14 Build site.
Rmd 4f44b92 pat-s 2020-02-14 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose =
html b1f675f pat-s 2020-01-08 Build site.
html f93458f pat-s 2019-12-21 Build site.
html 6f633ff pat-s 2019-09-02 Build site.
Rmd 518d0cb pat-s 2019-09-01 style files using tidyverse style
html 7582c67 pat-s 2019-08-31 Build site.
html caafca3 pat-s 2019-08-29 Build site.
html abed0ec pat-s 2019-08-12 Build site.
html df85aba pat-s 2019-07-12 Build site.
html 3a44a95 pat-s 2019-07-10 Build site.
html 4f6bc44 pat-s 2019-07-02 Build site.
Rmd 888dc6b pat-s 2019-07-02 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose =
Rmd 24e318f pat-s 2019-07-01 update reports
Rmd b1f8fd7 pat-s 2019-07-01 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose =
Rmd 0969776 pat-s 2019-06-28 misc
html 32d5be0 pat-s 2019-06-27 Build site.
Rmd 185d576 pat-s 2019-06-27 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
Rmd ca7205f pat-s 2019-06-27 add new report
Rmd f49f020 pat-s 2019-06-26 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
html 3110e18 pat-s 2019-06-24 Build site.
Rmd 13b04f0 pat-s 2019-06-24 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
html 8b7af59 pat-s 2019-06-22 Build site.
Rmd 6402961 pat-s 2019-06-22 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
html b5ca114 pat-s 2019-06-21 Build site.
Rmd 7b1372a pat-s 2019-06-21 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
Rmd 2ffcc3b pat-s 2019-06-19 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
Rmd 4cf247a pat-s 2019-06-18 fix git
html 4cf247a pat-s 2019-06-18 fix git
Rmd 48817ef pat-s 2019-06-15 move figure
html 4c3422d pat-s 2019-06-15 Build site.
html 55e63a8 pat-s 2019-06-15 Build site.
Rmd 21871f7 pat-s 2019-06-15 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)
Rmd 6e2989d pat-s 2019-06-15 update reports
Rmd eaa444a pat-s 2019-06-15 add EDA and spectral signatures report
html 5230081 pat-s 2019-06-15 Build site.
Rmd a036319 pat-s 2019-06-15 wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE)

Datasets

VI

Overview

Name Value
Rows 1,808
Columns 91
Discrete columns 0
Continuous columns 91
All missing columns 0
Missing observations 0
Complete Rows 1,808
Total observations 164,528

Histograms

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
8dc0133 pat-s 2021-02-09
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

PCA

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
8dc0133 pat-s 2021-02-09
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
8b5e422 pat-s 2020-08-05
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
8dc0133 pat-s 2021-02-09
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
      pc        var         pct   cum_pct
 1:  PC1 42.4409509 0.471566121 0.4715661
 2:  PC2 22.4736281 0.249706979 0.7212731
 3:  PC3  5.6290208 0.062544676 0.7838178
 4:  PC4  3.6045716 0.040050796 0.8238686
 5:  PC5  2.7456808 0.030507564 0.8543761
 6:  PC6  1.7161651 0.019068501 0.8734446
 7:  PC7  1.4065542 0.015628380 0.8890730
 8:  PC8  1.1726462 0.013029403 0.9021024
 9:  PC9  1.0737238 0.011930265 0.9140327
10: PC10  0.9993040 0.011103377 0.9251361
11: PC11  0.9105677 0.010117419 0.9352535
12: PC12  0.7462052 0.008291169 0.9435446

Corr

Version Author Date
d9e2d9c pat-s 2021-04-12
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
8b5e422 pat-s 2020-08-05
3cab82e pat-s 2020-02-15
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

NRI

Overview

Name Value
Rows 1,808
Columns 7,876
Discrete columns 0
Continuous columns 7,876
All missing columns 0
Missing observations 0
Complete Rows 1,808
Total observations 14,239,808

Histograms

No histograms for NRI -> too many features.

PCA

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
8b5e422 pat-s 2020-08-05
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
6f633ff pat-s 2019-09-02
7582c67 pat-s 2019-08-31
abed0ec pat-s 2019-08-12
3a44a95 pat-s 2019-07-10
4f6bc44 pat-s 2019-07-02
32d5be0 pat-s 2019-06-27
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
4c3422d pat-s 2019-06-15
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25

Corr

No correlation plot for NRI -> too many features.

HR

Overview

Name Value
Rows 1,808
Columns 123
Discrete columns 0
Continuous columns 123
All missing columns 0
Missing observations 0
Complete Rows 1,808
Total observations 222,384

Histograms

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

PCA

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
8b5e422 pat-s 2020-08-05
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26

Corr

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
875226f pat-s 2020-12-26
a016ad6 pat-s 2020-12-25
8b5e422 pat-s 2020-08-05
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
b1f675f pat-s 2020-01-08
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
5230081 pat-s 2019-06-15

Custom plots

Mean defoliation per plot

# A tibble: 4 x 2
  plot     `mean(defoliation)`
* <fct>                  <dbl>
1 Laukiz 1                57.2
2 Laukiz 2                13.5
3 Luiando                 68.4
4 Oiartzun                69.1

Coefficient of variation

# A tibble: 4 x 2
  plot     `(sd(defoliation)/mean(defoliation)) * 100`
* <fct>                                          <dbl>
1 Laukiz 1                                        34.5
2 Laukiz 2                                       125. 
3 Luiando                                         12.2
4 Oiartzun                                        20.2

sd / skewness

# A tibble: 4 x 2
  plot     `((sd(defoliation)/mean(defoliation)) * 100)/e1071::skewness(defolia…
* <fct>                                                                    <dbl>
1 Laukiz 1                                                                -40.7 
2 Laukiz 2                                                                 55.0 
3 Luiando                                                                  -3.19
4 Oiartzun                                                                -21.5 
# A tibble: 4 x 2
  plot     `sd(defoliation)`
* <fct>                <dbl>
1 Laukiz 1             19.8 
2 Laukiz 2             16.9 
3 Luiando               8.32
4 Oiartzun             14.0 
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'

Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'

Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'

Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
8dc0133 pat-s 2021-02-09
a016ad6 pat-s 2020-12-25
2be34b0 pat-s 2020-03-22
f2c521e pat-s 2020-02-14
f93458f pat-s 2019-12-21
4f6bc44 pat-s 2019-07-02
b5ca114 pat-s 2019-06-21
4cf247a pat-s 2019-06-18
55e63a8 pat-s 2019-06-15

Point density

Mean average distance between all trees in a given plot.

Calculated via raster::pointDistance(allpairs = TRUE).

$`Laukiz 1`
[1] 34.3363

$`Laukiz 2`
[1] 61.5862

$Luiando
[1] 33.75951

$Oiartzun
[1] 35.09547

PCA feature set comparison

Comparing the “proportion of variance explained” (POV) for all feature sets.

Version Author Date
af4e9aa pat-s 2021-04-05
5820967 pat-s 2021-03-30
b1e5802 pat-s 2021-02-10
8dc0133 pat-s 2021-02-09
fd3acb5 pat-s 2020-12-26
06f8310 pat-s 2020-12-26
b65821e pat-s 2020-12-26
0328965 pat-s 2020-12-26
875226f pat-s 2020-12-26

Buffer extraction scenario sketches

Standard scenario (somewhere within the pixel)

Extreme scenario (at the border of one or multiple pixels)


R version 4.0.4 (2021-02-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS:   /opt/spack/opt/spack/linux-centos7-x86_64/gcc-9.2.0/r-4.0.4-udi7a3ahhtokdcoyqdbndhebeupt7hid/rlib/R/lib/libRblas.so
LAPACK: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-9.2.0/r-4.0.4-udi7a3ahhtokdcoyqdbndhebeupt7hid/rlib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
 [1] patchwork_1.1.1    fs_1.5.0           raster_3.4-5       sp_1.4-5          
 [5] purrr_0.3.4        knitr_1.31         ggpubr_0.4.0       ggplot2_3.3.3     
 [9] ggsci_2.9          dplyr_1.0.4        DataExplorer_0.8.2 usethis_2.0.0     
[13] magrittr_2.0.1     drake_7.13.2      

loaded via a namespace (and not attached):
 [1] tidyr_1.1.2       carData_3.0-4     R.utils_2.10.1    highr_0.8        
 [5] base64url_1.4     renv_0.13.2       cellranger_1.1.0  yaml_2.2.1       
 [9] progress_1.2.2    pillar_1.4.7      backports_1.2.1   lattice_0.20-41  
[13] glue_1.4.2        digest_0.6.27     promises_1.1.1    ggsignif_0.6.0   
[17] colorspace_2.0-0  plyr_1.8.6        htmltools_0.5.1.1 httpuv_1.5.5     
[21] R.oo_1.24.0       pkgconfig_2.0.3   broom_0.7.4       haven_2.3.1      
[25] scales_1.1.1      whisker_0.4       openxlsx_4.2.3    later_1.1.0.1    
[29] rio_0.5.16        git2r_0.28.0      tibble_3.0.6      txtq_0.2.3       
[33] farver_2.0.3      generics_0.1.0    car_3.0-10        ellipsis_0.3.1   
[37] withr_2.4.1       cli_2.4.0         crayon_1.4.0      readxl_1.3.1     
[41] evaluate_0.14     storr_1.2.5       R.methodsS3_1.8.1 fansi_0.4.2      
[45] class_7.3-18      rstatix_0.6.0     forcats_0.5.1     foreign_0.8-81   
[49] tools_4.0.4       data.table_1.13.6 prettyunits_1.1.1 hms_1.0.0        
[53] lifecycle_0.2.0   stringr_1.4.0     munsell_0.5.0     zip_2.1.1        
[57] e1071_1.7-4       networkD3_0.4     compiler_4.0.4    rlang_0.4.10     
[61] grid_4.0.4        rstudioapi_0.13   htmlwidgets_1.5.3 igraph_1.2.6     
[65] labeling_0.4.2    rmarkdown_2.6     gtable_0.3.0      codetools_0.2-18 
[69] abind_1.4-5       curl_4.3          reshape2_1.4.4    R6_2.5.0         
[73] gridExtra_2.3     rgdal_1.5-23      utf8_1.1.4        filelock_1.0.2   
[77] workflowr_1.6.2   rprojroot_2.0.2   stringi_1.5.3     parallel_4.0.4   
[81] Rcpp_1.0.6        vctrs_0.3.6       tidyselect_1.1.0  xfun_0.20