**Last updated:** 2021-01-26

**Checks:** 2 0

**Knit directory:** `fiveMinuteStats/analysis/`

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The *Checks* tab describes the reproducibility checks that were applied when the results were created. The *Past versions* tab lists the development history.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a40ff17. See the *Past versions* tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use `wflow_publish`

or `wflow_git_commit`

). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

```
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: analysis/.Rhistory
Ignored: analysis/bernoulli_poisson_process_cache/
Untracked files:
Untracked: _workflowr.yml
Untracked: analysis/CI.Rmd
Untracked: analysis/gibbs_structure.Rmd
Untracked: analysis/libs/
Untracked: analysis/results.Rmd
Untracked: analysis/shiny/tester/
Unstaged changes:
Modified: analysis/LR_and_BF.Rmd
Modified: analysis/mixture_models_01.Rmd
Deleted: analysis/r_simplemix_extended.Rmd
```

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (`analysis/index.Rmd`

) and HTML (`docs/index.html`

) files. If you’ve configured a remote Git repository (see `?wflow_git_remote`

), click on the hyperlinks in the table below to view the files as they were in that past version.

File | Version | Author | Date | Message |
---|---|---|---|---|

Rmd | a40ff17 | Matthew Stephens | 2021-01-26 | workflowr::wflow_publish(“index.Rmd”) |

html | fe66b94 | Matthew Stephens | 2021-01-26 | Build site. |

Rmd | c2b0a96 | Matthew Stephens | 2021-01-26 | workflowr::wflow_publish(“index.Rmd”) |

html | e4dabb4 | Matthew Stephens | 2021-01-25 | Build site. |

Rmd | f74014b | Matthew Stephens | 2021-01-25 | workflowr::wflow_publish(“index.Rmd”) |

html | aebdb28 | Matthew Stephens | 2020-09-23 | Build site. |

Rmd | 1cb6337 | Matthew Stephens | 2020-09-23 | workflowr::wflow_publish(“index.Rmd”) |

html | 38e0138 | Matthew Stephens | 2020-07-22 | Build site. |

Rmd | daa57b1 | Matthew Stephens | 2020-07-22 | workflowr::wflow_publish(“index.Rmd”) |

html | a5a03a1 | Matthew Stephens | 2020-03-01 | Build site. |

Rmd | 66fc13f | Matthew Stephens | 2020-03-01 | gaussian_process.Rmd |

html | 5f62ee6 | Matthew Stephens | 2019-03-31 | Build site. |

Rmd | 0cd28bd | Matthew Stephens | 2019-03-31 | workflowr::wflow_publish(all = TRUE) |

html | dbcff1f | stephens999 | 2019-01-23 | Build site. |

Rmd | 7a0ba80 | stephens999 | 2019-01-23 | workflowr::wflow_publish(“analysis/index.Rmd”) |

html | 3c642ff | stephens999 | 2018-05-17 | Build site. |

Rmd | e8e0399 | stephens999 | 2018-05-17 | wflow_publish(“analysis/index.Rmd”) |

html | ccb9962 | stephens999 | 2018-05-03 | Build site. |

Rmd | 5530e01 | stephens999 | 2018-05-03 | workflowr::wflow_publish(“analysis/index.Rmd”) |

html | 6053d26 | stephens999 | 2018-04-23 | Build site. |

Rmd | 1077c97 | stephens999 | 2018-04-23 | workflowr::wflow_publish(c(“analysis/index.Rmd”, “analysis/MH_intro.Rmd”, |

html | 30630b2 | stephens999 | 2018-04-23 | Build site. |

Rmd | 5c310c2 | stephens999 | 2018-04-23 | MH_intro.Rmd |

html | f995d0a | stephens999 | 2018-04-23 | Build site. |

Rmd | a7ec7b7 | stephens999 | 2018-04-23 | workflowr::wflow_publish(c(“analysis/index.Rmd”, |

html | d251967 | stephens999 | 2018-04-23 | Build site. |

Rmd | 9e15ba0 | stephens999 | 2018-04-23 | workflowr::wflow_publish(c(“analysis/index.Rmd”, |

html | d41d022 | stephens999 | 2017-04-24 | Build site. |

Rmd | f012c1d | stephens999 | 2017-04-24 | Files commited by wflow_commit. |

html | c1d0c3f | stephens999 | 2017-04-17 | update index |

Rmd | 72ef4ea | stephens999 | 2017-04-17 | Files commited by wflow_commit. |

html | c7e182b | stephens999 | 2017-04-17 | Build site. |

Rmd | 9f09eca | stephens999 | 2017-04-17 | Files commited by wflow_commit. |

html | 34bcc51 | John Blischak | 2017-03-06 | Build site. |

Rmd | 2aa70fe | John Blischak | 2017-03-06 | Manually udpate some Rmd files. |

html | 8e61683 | Marcus Davy | 2017-03-03 | rendered html using wflow_build(all=TRUE) |

html | fffe50c | stephens999 | 2017-02-20 | Build site. |

Rmd | 92d7daa | stephens999 | 2017-02-20 | Files commited by wflow_commit. |

html | 20c6639 | stephens999 | 2017-02-19 | Build site. |

Rmd | d20b048 | stephens999 | 2017-02-19 | Files commited by wflow_commit. |

html | 9778b49 | stephens999 | 2017-02-19 | Build site. |

Rmd | 592db57 | stephens999 | 2017-02-19 | Files commited by wflow_commit. |

html | 48bf85f | stephens999 | 2017-01-28 | Build site. |

Rmd | ca3b3b6 | stephens999 | 2017-01-28 | Files commited by wflow_commit. |

html | fbfa018 | stephens999 | 2017-01-28 | Build site. |

Rmd | 2c4f22e | stephens999 | 2017-01-28 | Files commited by wflow_commit. |

html | a19b65a | stephens999 | 2017-01-24 | Build site. |

Rmd | fc0336e | stephens999 | 2017-01-24 | Files commited by wflow_commit. |

html | c3b365a | John Blischak | 2017-01-02 | Build site. |

Rmd | ae24830 | stephens999 | 2016-09-04 | add example of computing LR on different data |

Rmd | 966d6f6 | stephens999 | 2016-05-17 | Merge branch ‘gh-pages’ of https://github.com/jhmarcus/fiveMinuteStats into jhmarcus-gh-pages |

Rmd | 6bb4560 | stephens999 | 2016-05-12 | add gibbs sampling example |

Rmd | a72861e | stephens999 | 2016-05-02 | add integral |

Rmd | 153e684 | stephens999 | 2016-05-02 | add IS |

Rmd | 8466ce3 | stephens999 | 2016-05-02 | add gibbs sampling example |

Rmd | 47f75ca | stephens999 | 2016-04-20 | add BF and p value comparison |

Rmd | c5e07f5 | Xiao Nan | 2016-04-13 | add shiny conjugate normal app link to index |

Rmd | ed83285 | jhmarcus | 2016-04-07 | added popgen section to index and wright_fisher tutorials |

Rmd | f1dd5fc | stephens999 | 2016-04-04 | update index |

Rmd | 106d322 | mbonakda | 2016-02-24 | add new notes to index |

Rmd | 294d219 | stephens999 | 2016-02-16 | add normal markov chain example |

Rmd | be2da01 | stephens999 | 2016-02-15 | add multivariate normal |

Rmd | 0ba385e | mbonakda | 2016-02-06 | update index |

Rmd | d1b8aae | jnovembre | 2016-02-05 | Changed sub-headings |

Rmd | dce7ece | jnovembre | 2016-02-05 | modified index.html to add Poisson process and fix typo |

Rmd | 1187afb | mbonakda | 2016-02-02 | fix typos |

Rmd | ac0ba21 | mbonakda | 2016-02-02 | add to index |

Rmd | 313901b | jnovembre | 2016-01-31 | Modified index and added html |

Rmd | ad8b7b5 | mbonakda | 2016-01-30 | update names |

Rmd | 4e0c4fd | mbonakda | 2016-01-30 | update index |

Rmd | 4335247 | mbonakda | 2016-01-23 | fix index typo |

Rmd | 9d4269b | mbonakda | 2016-01-23 | add simulating discrete chains to index |

Rmd | b0339a9 | stephens999 | 2016-01-19 | update index |

Rmd | 9156677 | stephens999 | 2016-01-19 | add multiclass example |

Rmd | ff6b857 | mbonakda | 2016-01-12 | add asymptotic normality of MLE and wilks |

Rmd | 3ee2cf4 | stephens999 | 2016-01-12 | add likelihood function |

Rmd | d6f4bea | stephens999 | 2016-01-12 | add examples |

Rmd | 6feeb2e | stephens999 | 2016-01-11 | update index |

Rmd | 8b7278d | stephens999 | 2016-01-11 | add LR for continuous data |

Rmd | 93476ef | stephens999 | 2016-01-07 | update LR to make clear it is for discrete data |

Rmd | 8f61232 | stephens999 | 2016-01-07 | add simple LR example |

Rmd | f1b8c7c | stephens999 | 2016-01-05 | add likelihood and loglikelihood |

Rmd | 90df5f8 | stephens999 | 2016-01-05 | tidy up material related to ashlar by removing much of it |

Rmd | d3c8f4e | jhsiao999 | 2015-12-12 | fix typo |

Rmd | 10bba89 | jhsiao999 | 2015-12-12 | add tutorial |

Rmd | 99f4499 | jhsiao999 | 2015-12-12 | add a Rmarkdown example |

Rmd | 1b891a0 | jhsiao999 | 2015-12-12 | first commit |

- Bayesian inference for comparing two fully-specified models
- Bayesian inference for comparing multiple fully-specified models
- Bayesian inference for a continuous parameter: analytic calculation
- Bayesian inference for a continuous parameter: summarizing the posterior
- Bayesian inference for a continuous parameter: conjugacy
- Bayesian inference for a normal mean
- Bayesian inference for a normal mean (shiny app illustration)
- Bayesian inference for multiple independent parameters

- Discrete-Time Markov Chains: Introduction
- Discrete-Time Markov Chains: Finding the Stationary Distribution via solution of the global balance equations
- Discrete-Time Markov Chains: Finding the Stationary Distribution via eigendecomposition
- Simulating Discrete-Time Markov Chains: An Introduction
- Simulating Discrete-Time Markov Chains: Limiting Distributions

This site was created with R Markdown