Last updated: 2019-06-22
Checks: 2 0
Knit directory: BUS_notebooks_R/
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File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | 3234021 | Lambda Moses | 2019-06-22 | Fix TCC typo |
html | 5502b27 | Lambda Moses | 2019-06-22 | Build site. |
Rmd | 34cd015 | Lambda Moses | 2019-06-22 | Changed site name; url remains the same |
html | e1da54f | Lambda Moses | 2019-06-22 | Build site. |
Rmd | b208bf2 | Lambda Moses | 2019-06-22 | Added images to index page |
html | cfd1e88 | Lambda Moses | 2019-06-22 | Build site. |
Rmd | cdf4749 | Lambda Moses | 2019-06-22 | Added link to kallisto bus paper |
html | 602b4f6 | Lambda Moses | 2019-06-22 | Build site. |
Rmd | 5fe6abd | Lambda Moses | 2019-06-22 | Updated index page for new notebooks |
html | 87d15f5 | Lambda Moses | 2019-02-14 | Build site. |
Rmd | 8d9fe9a | Lambda Moses | 2019-02-14 | More detailed explanations for kallisto bus workshop |
html | b7b21a0 | Lambda Moses | 2019-02-02 | Build site. |
Rmd | c7ecb56 | Lambda Moses | 2019-02-02 | Added BUSpaRse installation link and note |
html | 85a5770 | Lambda Moses | 2018-12-14 | Build site. |
Rmd | ca1d6ce | Lambda Moses | 2018-12-14 | Clean up |
html | 6276894 | Lambda Moses | 2018-12-14 | Build site. |
html | 1cc5f8a | Lambda Moses | 2018-12-14 | Build site. |
Rmd | 03c3319 | Lambda Moses | 2018-12-14 | Changed site name |
html | db70187 | Lambda Moses | 2018-12-14 | Build site. |
Rmd | b67fc92 | Lambda Moses | 2018-12-14 | Added 10xv3 notebook and further elaboration to 10xv2 notebook |
html | 064264a | Lambda Moses | 2018-12-14 | Build site. |
Rmd | d5d64e9 | Lambda Moses | 2018-12-14 | Added installation instruction |
html | f5616a8 | Lambda Moses | 2018-12-14 | Build site. |
Rmd | 0dc76a9 | Lambda Moses | 2018-12-14 | Changed to new url |
html | 540134b | Lambda Moses | 2018-12-14 | Build site. |
Rmd | e40da79 | Lambda Moses | 2018-12-14 | Changed URL as this repo is transferred to BUStools |
html | fff442d | Lambda Moses | 2018-12-14 | Build site. |
Rmd | 695e202 | Lambda Moses | 2018-12-14 | Changed name to BUSpaRse |
html | 9209390 | Lambda Moses | 2018-12-14 | Update website |
Rmd | 37238e5 | Lambda Moses | 2018-12-14 | Link to this GitHub repo on the website |
html | 2da3b35 | Lambda Moses | 2018-12-14 | Build site. |
Rmd | 1fc3e91 | Lambda Moses | 2018-12-14 | Publish 10xv2 notebook |
Rmd | 55164fb | Lambda Moses | 2018-12-14 | Start workflowr project. |
This repository has example notebooks that demonstrate usage of kallisto bus
to generate gene count or transcript compatibility count (TCC) matrices from FASTQ files and some basic downstream analyses. To run the notebooks, please install kallisto, bustools, and the BUSpaRse R package.
1k PBMCs from a Healthy Donor (10x v3 chemistry); demonstration of TENxBUSData
and BUSpaRse
RNA velocity with 10k E18 mouse neurons from 10x (coming soon)
Differential expression with equivalence classes in TCC matrix (coming soon)