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This document outlines the process of collecting, amalgamating, and
analyzing species presence data from the FACE-IT Arctic Fjords study
sites.
To meet the requirements of the FACE-IT project, the data must meet
certain criteria. The data must be from one of the seven study sites of
the project, in Svalbard, Greenland or Norway. Data must include species
biomass (presence data will also be collected). The data must concern
marine species such as birds, fish, mammals, zooplankton or
phytoplankton.
To ensure data quality, it is essential to have reliable sources. For
this, research and academic sites were used, in particular those of
MOSJ, GEM, NPI.
Once the sources are found, it is important to collect the datasets
that can be used for the project. Sometimes it is necessary to log in to
certain websites to access the data. In order to use this data to its
highest potential, it is important to determine what useful and
necessary information in each dataset should be preserved. Careful
consideration must be given to each set to ensure the quality of the
information.
The data collected will be added to the ones already present on the FACE-IT project, they will have to follow the same format and respect the order by filling the following columns:
the date of access to the data,
the URL where to find the set,
the citation,
the type of data,
the site (kong, nuup, svalbard, is, disko, …),
the category (bio, cryo, social, …),
the driver (category details.) ),
the variable,
the longitude of each data,
the latitude of each data,
the date of collection of the data,
the depth of water of each data,
the value
All the variables follow a precise naming system. This allows to save their main information. For each variable we find:
For an easier use, the different species studied have been divided in several categories each distinguished by a three letters code: Birds, Poisons |FIS|, Marine mammal |MAM|, Zooplankton |ZOO| and Phytoplankton |PHY|.
For the birds, subcategories have been added. The goal of the project being the study of marine species and the data collected concerning different types of birds. A distinction was made between marine birds |SBI|, land birds (non marine) |NBI| and species not yet sorted |BIR|.
Once the data are formatted, they are combined by geographic area, saved and added to the website.
Once the sets are complete, an analysis of the data recovered can be
made. This allows us to see the information collected and to highlight
certain patterns.
figure 1 - a) Svalbard data count by year, b) Svalbard species biomass over year
figure 2 - a) Kongsfjorden data count by year, b) Kongsfjorden species biomass over year
figure 3 - a) Isfjorden data count by year, b) Isfjorden species biomass over year
sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3; LAPACK version 3.9.0
locale:
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[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.7.1
loaded via a namespace (and not attached):
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[29] fs_1.6.3 pkgconfig_2.0.3 Rcpp_1.0.12 rstudioapi_0.15.0
[33] later_1.3.2 digest_0.6.34 R6_2.5.1 utf8_1.2.4
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