eMLR - data preparation

workflowr

• Summary
• Checks
• Past versions

Last updated: 2021-07-19

Checks: 7 0

Knit directory: emlr_mod_v_XXX/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

---

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200707)

The command set.seed(20200707) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: 07d66bf

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 07d66bf. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Unstaged changes:
    Modified:   data/auxillary/params_local.rds

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/eMLR_data_preparation.Rmd) and HTML (docs/eMLR_data_preparation.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	57d0420	Donghe-Zhu	2021-07-16	Build site.
html	c1be8f6	Donghe-Zhu	2021-07-16	1
html	26a7c15	Donghe-Zhu	2021-07-16	Build site.
html	046902b	Donghe-Zhu	2021-07-16	Build site.
html	3d4ac14	Donghe-Zhu	2021-07-15	Build site.
html	be6fff9	Donghe-Zhu	2021-07-15	Build site.
html	b473472	Donghe-Zhu	2021-07-15	Build site.
html	363270a	Donghe-Zhu	2021-07-15	Build site.
html	8b75a03	Donghe-Zhu	2021-07-15	Build site.
Rmd	4f7d192	Donghe-Zhu	2021-07-15	local rebuild
html	294f8ca	Donghe-Zhu	2021-07-15	Build site.
Rmd	663457c	Donghe-Zhu	2021-07-15	local rebuild
html	a01e135	Donghe-Zhu	2021-07-07	Build site.
html	bc83ef2	Donghe-Zhu	2021-07-07	Build site.
Rmd	0a4ac57	Donghe-Zhu	2021-07-07	local rebuild
html	75e7b07	Donghe-Zhu	2021-07-06	Build site.
html	697aa6d	Donghe-Zhu	2021-07-06	Build site.
html	d52e2de	Donghe-Zhu	2021-07-06	Build site.
html	f2bde6b	Donghe-Zhu	2021-07-06	Build site.
html	1133f28	Donghe-Zhu	2021-07-06	Build site.
html	fe3a1cd	Donghe-Zhu	2021-07-06	Build site.
html	d9cdf15	Donghe-Zhu	2021-07-06	Build site.
html	ee4cd2d	Donghe-Zhu	2021-07-06	Build site.
html	93821c1	Donghe-Zhu	2021-07-05	Build site.
html	d44db8e	Donghe-Zhu	2021-07-05	Build site.
html	20b3436	Donghe-Zhu	2021-07-05	Build site.
html	d982ea5	Donghe-Zhu	2021-07-05	Build site.
html	7397e53	Donghe-Zhu	2021-07-05	Build site.
html	f2e4805	Donghe-Zhu	2021-07-05	Build site.
html	e2d011a	Donghe-Zhu	2021-07-05	Build site.
html	85e0349	Donghe-Zhu	2021-07-05	Build site.
html	6ee0146	Donghe-Zhu	2021-07-05	Build site.
html	a482a6b	Donghe-Zhu	2021-07-05	Build site.
html	f59f1b3	Donghe-Zhu	2021-07-05	Build site.
html	116bcab	Donghe-Zhu	2021-07-04	Build site.
Rmd	5254b21	Donghe-Zhu	2021-07-04	local rebuild
html	cb1c8dc	Donghe-Zhu	2021-07-04	Build site.
html	c9bdd83	Donghe-Zhu	2021-07-04	Build site.
html	1920ad9	Donghe-Zhu	2021-07-04	Build site.
Rmd	76593b6	Donghe-Zhu	2021-06-25	random -> GLODAP
html	0b02791	Donghe-Zhu	2021-06-25	change random subset files
html	caf62d8	Donghe-Zhu	2021-06-25	Build site.
html	90a9da5	Donghe-Zhu	2021-06-25	Build site.
html	bb413c8	Donghe-Zhu	2021-06-25	Build site.
Rmd	62218ac	Donghe-Zhu	2021-06-24	local rebuild
html	e7a5266	Donghe-Zhu	2021-06-24	Build site.
html	7c57720	Donghe-Zhu	2021-06-24	Build site.
html	b5b95a9	Donghe-Zhu	2021-06-24	Build site.
html	472aad4	Donghe-Zhu	2021-06-24	Build site.
Rmd	76ce72b	Donghe-Zhu	2021-06-24	local rebuild
html	d517836	Donghe-Zhu	2021-06-24	0
html	9221bfe	Donghe-Zhu	2021-06-24	Build site.
Rmd	826069f	Donghe-Zhu	2021-06-24	local rebuild
html	bff5fbf	Donghe-Zhu	2021-06-23	Build site.
Rmd	a302ba7	Donghe-Zhu	2021-06-23	local rebuild
html	256a616	Donghe-Zhu	2021-06-23	Build site.
html	00072e2	Donghe-Zhu	2021-06-23	Build site.
Rmd	71d2509	Donghe-Zhu	2021-06-23	local rebuild
html	61cae2b	Donghe-Zhu	2021-06-20	1
html	d20c383	Donghe-Zhu	2021-06-18	Build site.
html	b0874a2	Donghe-Zhu	2021-06-17	Build site.
html	72c2f2e	Donghe-Zhu	2021-06-15	Build site.
html	d97dcb6	Donghe-Zhu	2021-06-08	1
html	25dda1d	Donghe-Zhu	2021-06-08	Build site.
html	bd2bcc3	Donghe-Zhu	2021-06-08	Build site.
html	e9b27d7	Donghe-Zhu	2021-06-07	Build site.
html	7ae0d4b	Donghe-Zhu	2021-06-07	Build site.
html	325391f	Donghe-Zhu	2021-06-07	Build site.
html	ed89970	Donghe-Zhu	2021-06-07	Build site.
html	df37958	Donghe-Zhu	2021-06-07	1
html	812bf63	Donghe-Zhu	2021-06-06	Build site.
html	65c89c8	Donghe-Zhu	2021-06-06	Build site.
html	9baa3b2	Donghe-Zhu	2021-06-06	debug
html	b7d99cf	Donghe-Zhu	2021-06-06	Build site.
html	5d8fa90	Donghe-Zhu	2021-06-06	Build site.
html	dbe2a95	Donghe-Zhu	2021-05-28	Build site.
html	d50b039	Donghe-Zhu	2021-05-28	Build site.
html	441ebe5	Donghe-Zhu	2021-05-28	Build site.
html	6262ad3	Donghe-Zhu	2021-05-28	Build site.
html	a61aa77	Donghe-Zhu	2021-05-28	Build site.
html	b8dbce4	Donghe-Zhu	2021-05-28	Build site.
html	94a833e	Donghe-Zhu	2021-05-27	Build site.
html	5e0bd64	Donghe-Zhu	2021-05-27	Build site.
html	af1eadd	Donghe-Zhu	2021-05-27	Build site.
html	9179bfe	Donghe-Zhu	2021-05-27	Build site.
html	28cbe5e	Donghe-Zhu	2021-05-27	Build site.
html	a618f02	Donghe-Zhu	2021-05-27	Build site.
html	4623e38	Donghe-Zhu	2021-05-27	Build site.
html	b81bb49	Donghe-Zhu	2021-05-27	Build site.
html	951e188	Donghe-Zhu	2021-05-27	Build site.
html	e377833	Donghe-Zhu	2021-05-26	Build site.
Rmd	896faa0	Donghe-Zhu	2021-05-18	final
html	2705a04	Donghe-Zhu	2021-03-28	Build site.
html	cd5f759	Donghe-Zhu	2021-03-28	Build site.
html	75dda4d	Donghe-Zhu	2021-03-27	Build site.
html	0b19f6e	Donghe-Zhu	2021-03-27	Build site.
html	e2704ca	Donghe-Zhu	2021-03-27	Build site.
html	3061a0b	Donghe-Zhu	2021-03-27	Build site.
html	b883157	Donghe-Zhu	2021-03-27	Build site.
html	0c20513	Donghe-Zhu	2021-03-26	Build site.
html	d19654d	Donghe-Zhu	2021-03-26	Build site.
html	6c53dbf	Donghe-Zhu	2021-03-25	Build site.
html	1914a11	Donghe-Zhu	2021-03-24	Build site.
html	8be810e	Donghe-Zhu	2021-03-23	Build site.
html	bf19764	Donghe-Zhu	2021-03-22	Build site.
html	3ec9d3d	Donghe-Zhu	2021-03-22	Build site.
html	134ace1	Donghe-Zhu	2021-03-22	Build site.
html	f6d70a4	Donghe-Zhu	2021-03-22	Build site.
html	183443b	Donghe-Zhu	2021-03-21	Build site.
html	2e6976b	Donghe-Zhu	2021-03-21	Build site.
html	51a42bd	Donghe-Zhu	2021-03-16	Build site.
html	f745381	Donghe-Zhu	2021-03-16	Build site.
html	aecbf75	Donghe-Zhu	2021-03-14	Build site.
html	1b2a0c2	Donghe-Zhu	2021-03-14	Build site.
html	6733e48	Donghe-Zhu	2021-03-12	Build site.
html	ba71e6a	Donghe-Zhu	2021-03-12	Build site.
html	9dbf5bd	Donghe-Zhu	2021-03-11	Build site.
html	a49df30	Donghe-Zhu	2021-03-11	Build site.
html	b3348a5	Donghe-Zhu	2021-03-11	Build site.
html	1c24ff7	Donghe-Zhu	2021-03-10	Build site.
html	94ce5a8	Donghe-Zhu	2021-03-10	Build site.
html	db33928	Donghe-Zhu	2021-03-10	Build site.
html	3d1f470	Donghe-Zhu	2021-03-10	Build site.
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html	65b0cef	Donghe-Zhu	2021-03-07	Build site.
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html	865f68c	Donghe-Zhu	2021-03-05	Build site.
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html	a79291f	Donghe-Zhu	2021-03-05	Build site.
html	e8c6f30	Donghe-Zhu	2021-03-04	Build site.
html	59288fe	Donghe-Zhu	2021-03-04	Build site.
html	731abc8	Donghe-Zhu	2021-03-04	Build site.
html	e2a5a33	Donghe-Zhu	2021-03-04	Build site.
html	c7892c1	Donghe-Zhu	2021-03-04	Build site.
html	924430b	Donghe-Zhu	2021-03-03	Build site.
html	0d0bca1	Donghe-Zhu	2021-03-03	Build site.
html	cb63c16	Donghe-Zhu	2021-03-03	Build site.
html	ffda45a	Donghe-Zhu	2021-03-03	Build site.
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html	c5e45a2	Donghe-Zhu	2021-03-03	Build site.
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html	c407a50	Donghe-Zhu	2021-03-03	Build site.
html	c911669	Donghe-Zhu	2021-03-03	Build site.
html	b71c719	Donghe-Zhu	2021-03-01	Build site.
html	13666ca	Donghe-Zhu	2021-03-01	Build site.
html	c6e60fe	Donghe-Zhu	2021-03-01	Build site.
html	7a388f7	Donghe-Zhu	2021-03-01	Build site.
html	799e913	Donghe-Zhu	2021-03-01	Build site.
html	66ff99f	Donghe-Zhu	2021-03-01	Build site.
html	ac9bb7a	Donghe-Zhu	2021-02-28	Build site.
html	efdc047	Donghe-Zhu	2021-02-28	Build site.
html	e9a7418	Donghe-Zhu	2021-02-28	Build site.
html	e152917	Donghe-Zhu	2021-02-28	Build site.
html	feb991c	Donghe-Zhu	2021-02-27	Build site.
html	287123c	Donghe-Zhu	2021-02-27	Build site.
html	54d5b5b	Donghe-Zhu	2021-02-27	Build site.
html	330f064	Donghe-Zhu	2021-02-27	Build site.
html	adbc9bc	Donghe-Zhu	2021-02-27	Build site.
html	5937141	Donghe-Zhu	2021-02-27	Build site.
html	4414bbf	Donghe-Zhu	2021-02-27	Build site.
html	a265efb	Donghe-Zhu	2021-02-27	Build site.
html	19edd1e	Donghe-Zhu	2021-02-27	Build site.
html	f20483f	Donghe-Zhu	2021-02-26	Build site.
html	6a2c7b3	Donghe-Zhu	2021-02-25	Build site.
html	02b976d	Donghe-Zhu	2021-02-24	Build site.
html	354c224	Donghe-Zhu	2021-02-24	Build site.
html	1a0a88a	Donghe-Zhu	2021-02-24	Build site.
html	57f701e	Donghe-Zhu	2021-02-24	Build site.
html	06f3149	Donghe-Zhu	2021-02-16	Build site.
html	401eab3	Donghe-Zhu	2021-02-15	Build site.
html	e3bba84	Donghe-Zhu	2021-02-15	Build site.
html	5dce4b1	Donghe-Zhu	2021-02-15	Build site.
html	4469a0c	Donghe-Zhu	2021-02-13	Build site.
html	5ae6a69	Donghe-Zhu	2021-02-10	Build site.
Rmd	eeb6557	Donghe-Zhu	2021-02-10	local rebuild
html	05385dc	Donghe-Zhu	2021-02-10	Build site.
html	f791ae4	Donghe-Zhu	2021-02-09	Build site.
html	f71ae34	Donghe-Zhu	2021-02-09	Build site.
html	c011832	Donghe-Zhu	2021-02-09	Build site.
html	a145fa7	Donghe-Zhu	2021-02-09	Build site.
html	c344e42	Donghe-Zhu	2021-02-08	Build site.
html	2f095d7	Donghe-Zhu	2021-02-07	Build site.
html	2305044	Donghe-Zhu	2021-02-07	Build site.
html	1fad5f1	Donghe-Zhu	2021-02-07	Build site.
html	ca03c39	Donghe-Zhu	2021-02-07	Build site.
html	e2ffc14	Donghe-Zhu	2021-02-05	Build site.
html	cd7c52c	Donghe-Zhu	2021-02-04	Build site.
html	bcf84f4	Donghe-Zhu	2021-02-02	Build site.
html	a518739	Donghe-Zhu	2021-02-01	Build site.
html	61666de	Donghe-Zhu	2021-01-31	Build site.
html	865b582	Donghe-Zhu	2021-01-31	Build site.
html	3e68089	Donghe-Zhu	2021-01-31	Build site.
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html	a1c8f87	Donghe-Zhu	2021-01-31	Build site.
html	ae5c18f	Donghe-Zhu	2021-01-31	Build site.
html	b50fe52	Donghe-Zhu	2021-01-31	Build site.
html	ac99ae5	jens-daniel-mueller	2021-01-29	code review
html	b5bdcaf	Donghe-Zhu	2021-01-29	Build site.
html	442010d	Donghe-Zhu	2021-01-29	Build site.
Rmd	e67e7dd	Donghe-Zhu	2021-01-29	surface equilibrium approach across all latitudes irrespective of gamma
html	372adf5	Donghe-Zhu	2021-01-29	Build site.
html	af8788e	Donghe-Zhu	2021-01-29	Build site.
html	21c91c9	Donghe-Zhu	2021-01-29	Build site.
html	eded038	Donghe-Zhu	2021-01-29	Build site.
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html	6a75576	Donghe-Zhu	2021-01-28	Build site.
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html	12bc567	Donghe-Zhu	2021-01-27	Build site.
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html	28509fc	Donghe-Zhu	2021-01-23	Build site.
html	4c28e4a	Donghe-Zhu	2021-01-22	Build site.
html	24cc264	jens-daniel-mueller	2021-01-22	cleaned /docs before creating copies
html	88eb28f	Donghe-Zhu	2021-01-21	Build site.
html	2679490	Donghe-Zhu	2021-01-21	Build site.
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html	d4cf1cb	Donghe-Zhu	2021-01-21	Build site.
html	1f3e5b6	jens-daniel-mueller	2021-01-20	Build site.
Rmd	d76b436	Donghe-Zhu	2021-01-19	model quality check
html	0e7bdf1	jens-daniel-mueller	2021-01-15	cleaning template repository
html	73cbef3	jens-daniel-mueller	2021-01-15	Build site.
html	4571843	jens-daniel-mueller	2021-01-14	revision and html deleted for template copying
html	23151cd	jens-daniel-mueller	2021-01-14	Build site.
html	b3564aa	jens-daniel-mueller	2021-01-14	Build site.
html	8d032c3	jens-daniel-mueller	2021-01-14	Build site.
html	022871c	Donghe-Zhu	2021-01-13	Build site.
Rmd	d44f36f	Donghe-Zhu	2021-01-13	reorder analysis final
html	17dee1d	jens-daniel-mueller	2021-01-13	Build site.
Rmd	ca5ba13	Donghe-Zhu	2021-01-13	reorder the analysis
html	a076226	Donghe-Zhu	2021-01-11	Build site.
Rmd	ac37e34	Donghe-Zhu	2021-01-11	add climate and subsetting condition
Rmd	52eff18	Donghe-Zhu	2021-01-09	Implemet model_run and subsetting
html	7cdea0c	jens-daniel-mueller	2021-01-06	Build site.
html	fa85b93	jens-daniel-mueller	2021-01-06	Build site.
Rmd	1d55c11	jens-daniel-mueller	2021-01-06	local rebuild after pulling
html	e5cb81a	Donghe-Zhu	2021-01-05	Build site.
Rmd	608cc45	Donghe-Zhu	2021-01-05	modification of analysis
html	a499f10	Donghe-Zhu	2021-01-05	Build site.
Rmd	5855606	Donghe-Zhu	2021-01-05	first model-based run
Rmd	715bdb4	Donghe-Zhu	2021-01-02	model modification
html	fb8a752	Donghe-Zhu	2020-12-23	Build site.
Rmd	82e3c9c	Donghe-Zhu	2020-12-23	first build after creating model template
html	8fae0b2	Donghe-Zhu	2020-12-21	Build site.
Rmd	d73ae35	Donghe-Zhu	2020-12-21	first version with lm error
html	c8b76b3	jens-daniel-mueller	2020-12-19	Build site.
Rmd	b5fedce	jens-daniel-mueller	2020-12-19	first build after creating model template
Rmd	8e8abf5	Jens Müller	2020-12-18	Initial commit

---

1 Required data

Required are:

• Synthetic cmorized model subsetting data based on preprocessed GLODAP data
  • cleaned data file
• Cmorized annual cant field for three reference year
• Cmorized annual mean atmospheric pCO₂

if (params_local$subsetting == "GLODAP") {
  
GLODAP <-
  read_csv(paste(
    path_version_data,
    "GLODAPv2.2020_clean_GLODAP.csv",
    sep = ""
  ))

}

if (params_local$subsetting == "random") {
  
GLODAP <-
  read_csv(paste(
    path_version_data,
    "GLODAPv2.2020_clean_random.csv",
    sep = ""
  ))

}

2 Calculation of tref

Calculate the reference year for each era and store it as csv file for further selection of corresponding Cant fields.

# calculate reference year
tref <- GLODAP %>%
  group_by(era) %>%
  summarise(year = round(median(year))) %>%
  ungroup()

# whether manually change the tref year
if (params_local$median_tref == "n") {
  
  tref$year[2] <- 2006
  tref$year[3] <- 2014

}

# write file
tref  %>%  write_csv(paste(path_version_data,
                           "tref.csv",
                           sep = ""))

cant_tref_1 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[1]),
    ".csv",
    sep = ""
  ))

cant_tref_2 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[2]),
    ".csv",
    sep = ""
  ))

cant_tref_3 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[3]),
    ".csv",
    sep = ""
  ))

co2_atm <-
  read_csv(paste(path_preprocessing,
                 "co2_atm.csv",
                 sep = ""))

3 PO₄*

3.1 Calculation

The predictor PO₄* was be calculated according to Clement and Gruber (2018), ie based on oxygen. Please note that an erroneous equations for PO4* calculation is given in the supplement of Gruber et al (2019), based on nitrate.

Here we use following equation:

if ("phosphate" %in% params_local$MLR_predictors) {
  print(b_phosphate_star)
  
  if ("phosphate_star" %in% params_local$MLR_predictors) {
    GLODAP <- GLODAP %>%
      mutate(phosphate_star = b_phosphate_star(phosphate, oxygen))
  }
  
}

function (phosphate, oxygen) 
{
    phosphate_star = phosphate + (oxygen/params_local$rPO) - 
        params_local$rPO_offset
    return(phosphate_star)
}

4 SiO₃*

4.1 Calculation

The predictor SiO₃* was be calculated according to Sarmiento et al. (2004), ie based on silicate and nitrate.

Here we use following equation:

print(b_silicate_star)

function (silicate, nitrate) 
{
    silicate_star = silicate - nitrate
    return(silicate_star)
}

if ("silicate_star" %in% params_local$MLR_predictors) {
GLODAP <- GLODAP %>% 
  mutate(silicate_star = b_silicate_star(silicate, nitrate))
}

5 C*

C* serves as a conservative tracer of anthropogenic CO₂ uptake. It is derived from synthetic subsetted DIC by removing the impact of

• organic matter formation and respiration
• calcification and calcium carbonate dissolution

Contributions of those processes are estimated from phosphate and alkalinity concentrations.

5.1 Stoichiometric ratios

The stoichiometric nutrient ratios for the production and mineralization of organic matter were set to:

• C/P: 117
• N/P: 16

5.2 Calculation

C* was calculated as:

print(b_cstar)

function (tco2, phosphate, talk) 
{
    cstar = tco2 - (params_local$rCP * phosphate) - 0.5 * (talk - 
        (params_local$rNP * phosphate))
    return(cstar)
}

if ("phosphate" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    mutate(
      rCP_phosphate = -params_local$rCP * phosphate,
      talk_05 = -0.5 * talk,
      rNP_phosphate_05 = -0.5 * params_local$rNP * phosphate,
      cstar = b_cstar(tco2, phosphate, talk)
    )
  
} else {
  GLODAP <- GLODAP %>%
    mutate(
      rCP_phosphate = -params_local$rCP * nitrate,
      talk_05 = -0.5 * talk,
      rNP_phosphate_05 = -0.5 * params_local$rNP * nitrate,
      cstar = b_cstar(tco2, nitrate, talk)
    )
  
}

5.3 Reference year adjustment

To adjust C* values to the reference year of each observation period, we assume a transient steady state change of cant between the time of model subsetting and the reference year. The adjustment requires an approximation of the cant concentration at the reference year. We here use the model-estimated annual cant field for each reference year.

5.3.1 Cant at tref

Read in Cant field for each reference year.

# print reference year table
kable(tref) %>%
  add_header_above() %>%
  kable_styling()

era	year
1982-1999	1994
2000-2009	2006
2010-2019	2014

# join cant with tref
cant_3d <- bind_rows(cant_tref_1, cant_tref_2, cant_tref_3)

cant_3d <- left_join(cant_3d, tref) %>%
  arrange(lon, lat, depth) %>% 
  select(lon, lat, depth, era, cant_total)

rm(cant_tref_1, cant_tref_2, cant_tref_3)

map +
  geom_raster(data = cant_3d %>% filter(depth == min(depth)),
              aes(lon, lat, fill = cant_total)) +
  facet_wrap(~ era, ncol = 1) +
  scale_fill_viridis_c() +
  labs(title = "Surface total Cant concentration")

Past versions of cant_surface_maps-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
fa85b93	jens-daniel-mueller	2021-01-06

5.3.2 Combine GLODAP + Cant

# observations grid per era
GLODAP_obs_grid_era <- GLODAP %>% 
  distinct(lat, lon, era)

# cant data at observations grid
cant_3d_obs <- left_join(
  GLODAP_obs_grid_era,
  cant_3d)

# calculate number of cant data points per grid cell
cant_3d_obs <- cant_3d_obs %>%
  group_by(lon, lat, era) %>% 
  mutate(n = n()) %>% 
  ungroup()

# GLODAP-based model subset with only one Cant value
map +
  geom_bin2d(data = cant_3d_obs,
             aes(lon, lat),
             binwidth = 1) +
  scale_fill_viridis_c() +
  facet_wrap(~ era, ncol = 1) +
  labs(title = "Number of Cant depth levels",
       subtitle = "available per latxlon grid cell")

Past versions of merge_cstar_cant-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
5e0bd64	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(cant_3d, GLODAP_obs_grid_era)

GLODAP_cant_obs <- full_join(GLODAP, cant_3d_obs)

rm(GLODAP, cant_3d_obs)

# fill number of cant data points per grid cell to all model subsetting
GLODAP_cant_obs <- GLODAP_cant_obs %>%
  group_by(lon, lat, era) %>% 
  fill(n, .direction = "updown") %>% 
  ungroup()

The model-estimated annual cant fields were merged with GLODAP-based synthetic cmorized model subsetting by:

• using an identical 1x1° horizontal grid
• linear interpolation of C_ant from standard to subsetting depth

# define positive cant values
GLODAP_cant_obs <- GLODAP_cant_obs %>%
  mutate(cant_total_pos = if_else(cant_total < 0, 0, cant_total))

# interpolate cant to subsetting depth
GLODAP_cant_obs_int <- GLODAP_cant_obs %>%
  filter(n > 1) %>% 
  group_by(lat, lon, era) %>%
  arrange(depth) %>%
  mutate(cant_int = approxfun(depth, cant_total_pos, rule = 2)(depth)) %>%
  ungroup()

# set cant for subsetting depth if only one cant available
#GLODAP_cant_obs_set <- GLODAP_cant_obs %>%
#  filter(n == 1) %>%
#  group_by(lat, lon, era) %>%
#  mutate(cant_int = mean(cant_total, na.rm = TRUE)) %>%
#  ungroup()

### bin data sets with interpolated and set cant
GLODAP_cant_obs <- GLODAP_cant_obs_int
rm(GLODAP_cant_obs_int)

if (params_local$subsetting == "GLODAP") {
  ggplot() +
    geom_path(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, date == ymd("2018-06-27")),
      aes(cant_int, depth, col = "interpolated")
    ) +
    scale_y_reverse() +
    facet_wrap( ~ era) +
    scale_color_brewer(palette = "Dark2", name = "") +
    labs(title = "Cant interpolation to subsetting depth - example profile")
  
}

Past versions of cant_interpolation_to_observations-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$subsetting == "random") {
  ggplot() +
    geom_path(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
      # filter(lat == 48.5, lon == 165.5, month == 6),
        filter(lat == 48.5, lon == 165.5),
      aes(cant_int, depth, col = "interpolated")
    ) +
    scale_y_reverse() +
    facet_wrap( ~ era) +
    scale_color_brewer(palette = "Dark2", name = "") +
    labs(title = "Cant interpolation to subsetting depth - example profile")
  
}

# remove cant data at grid cells without observations
GLODAP <- GLODAP_cant_obs %>%
  filter(!is.na(cstar)) %>%
  mutate(cant_total_pos = cant_int) %>%
  select(-c(cant_int, cant_total, n))

rm(GLODAP_cant_obs)

5.3.3 Merge GLODAP + atm. pCO₂

GLODAP-based subsetting were merged with mean annual atmospheric pCO₂ levels by year.

GLODAP <- left_join(GLODAP, co2_atm)

5.3.4 Calculation

# assign reference year
GLODAP <- GLODAP %>% 
  group_by(era) %>% 
  mutate(tref = median(year)) %>% 
  ungroup()

# extract atm pCO2 at reference year
co2_atm_tref <- right_join(co2_atm, tref) %>% 
  select(-year) %>% 
  rename(pCO2_tref = pCO2)

# merge atm pCO2 at tref with GLODAP
GLODAP <- full_join(GLODAP, co2_atm_tref)
rm(co2_atm, tref)

# calculate cstar for reference year
GLODAP <- GLODAP %>%
  mutate(
    cstar_tref_delta =
      ((pCO2 - pCO2_tref) / (pCO2_tref - params_local$preind_atm_pCO2)) * cant_total_pos,
    cstar_tref = cstar - cstar_tref_delta)

5.4 Control plots

GLODAP %>% 
  ggplot(aes(cstar_tref_delta)) +
  geom_histogram(binwidth = 1) +
  labs(title = "Histogramm with binwidth = 1")

Past versions of cstar_reference_year_adjustment_histogram-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

GLODAP %>% 
  sample_n(1e4) %>% 
  ggplot(aes(year, cstar_tref_delta, col = cant_total_pos)) +
  geom_point() +
  scale_color_viridis_c() +
  labs(title = "Time series of random subsample 1e4")

Past versions of cstar_reference_year_adjustment_vs_time_cant-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a076226	Donghe-Zhu	2021-01-11
7cdea0c	jens-daniel-mueller	2021-01-06
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

GLODAP %>% 
  ggplot(aes(year, cstar_tref_delta)) +
  geom_bin2d(binwidth = 1) +
  scale_fill_viridis_c(trans = "log10") +
  labs(title = "Heatmap with binwidth = 1")

Past versions of cstar_reference_year_adjustment_vs_time_counts-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

6 Selected section plots

A selected section is plotted to demonstrate the magnitude of various parameters and corrections relevant to C*.

if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>%
    filter(lon %in% params_global$lon_Atl_section)
  
}

if (params_local$subsetting == "GLODAP") {
  map +
    geom_path(data = GLODAP_cruise %>%
                arrange(date),
              aes(lon, lat)) +
    geom_point(data = GLODAP_cruise %>%
                 arrange(date),
               aes(lon, lat, col = date)) +
    scale_color_viridis_c(trans = "date") +
    labs(title = paste("Cruise year:", mean(GLODAP_cruise$year)))
}

Past versions of meridional_sections-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
5e0bd64	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$subsetting == "random") {
  map +
    geom_path(data = GLODAP_cruise,
              aes(lon, lat)) +
    geom_point(data = GLODAP_cruise,
               aes(lon, lat)) +
    scale_color_viridis_c(trans = "date") +
    labs(title = paste("Cruise year:", mean(GLODAP_cruise$year)))
  
}

lat_section <-
  GLODAP_cruise %>%
  ggplot(aes(lat, depth)) +
  scale_y_reverse() +
  scale_fill_viridis_c() +
  theme(axis.title.x = element_blank())

for (i_var in c("tco2",
                "rCP_phosphate",
                "talk_05",
                "rNP_phosphate_05",
                "cstar",
                "cstar_tref")) {
  print(lat_section +
          stat_summary_2d(aes(z = !!sym(i_var))) +
          scale_fill_viridis_c(name = i_var)
        )
  
}

Past versions of meridional_sections-2.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of meridional_sections-3.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of meridional_sections-4.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of meridional_sections-5.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of meridional_sections-6.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of meridional_sections-7.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(lat_section, GLODAP_cruise)

7 Isoneutral slabs

The following boundaries for isoneutral slabs were defined:

• Atlantic: -, 26, 26.5, 26.75, 27, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1, 28.15, 28.2,
• Indo-Pacific: -, 26, 26.5, 26.75, 27, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1, 28.2, 28.3,

Continuous neutral densities (gamma) values from model subsetting are grouped into isoneutral slabs.

GLODAP <- m_cut_gamma(GLODAP, "gamma")

if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>% 
  filter(lon %in% params_global$lon_Atl_section)
  
}

lat_section <- 
GLODAP_cruise %>%
  ggplot(aes(lat, depth)) +
  scale_y_reverse() +
  theme(legend.position = "bottom")

lat_section +
  geom_point(aes(col = gamma_slab)) +
  scale_color_viridis_d()

Past versions of meridional_sections_isoneutral_slabs-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
2b6c392	Donghe-Zhu	2021-03-10
9f58753	Donghe-Zhu	2021-03-10
112dea0	Donghe-Zhu	2021-03-08
1843412	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
ffda45a	Donghe-Zhu	2021-03-03
691ba81	Donghe-Zhu	2021-03-03
c5e45a2	Donghe-Zhu	2021-03-03
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
17dee1d	jens-daniel-mueller	2021-01-13
e5cb81a	Donghe-Zhu	2021-01-05
c8b76b3	jens-daniel-mueller	2020-12-19

rm(lat_section, GLODAP_cruise)

# this section was only used to calculate gamma locally, and compare it to the value provided in GLODAP data set
if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>% 
  filter(lon %in% params_global$lon_Atl_section)
  
}

library(oce)
library(gsw)
# calculate pressure from depth

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(CTDPRS = gsw_p_from_z(-depth,
                               lat))

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(THETA = swTheta(salinity = sal,
                         temperature = temp,
                         pressure = CTDPRS,
                         referencePressure = 0,
                         longitude = lon-180,
                         latitude = lat))

GLODAP_cruise <- GLODAP_cruise %>% 
  rename(LATITUDE = lat,
         LONGITUDE = lon,
         SALNTY = sal,
         gamma_provided = gamma)

library(reticulate)
source_python(
  paste(
    path_root,
    "/utilities/functions/python_scripts/",
    "Gamma_GLODAP_python.py",
    sep = ""
  )
)

GLODAP_cruise <- calculate_gamma(GLODAP_cruise)

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(gamma_delta = gamma_provided - GAMMA)

lat_section <- 
GLODAP_cruise %>%
  ggplot(aes(LATITUDE, CTDPRS)) +
  scale_y_reverse() +
  theme(legend.position = "bottom")

lat_section +
  stat_summary_2d(aes(z = gamma_delta)) +
  scale_color_viridis_c()

GLODAP_cruise %>% 
  ggplot(aes(gamma_delta))+
  geom_histogram()

rm(lat_section, GLODAP_cruise, cruises_meridional)

8 Synthetic data coverage

GLODAP <- GLODAP %>% 
  mutate(gamma_slab = factor(gamma_slab), 
         gamma_slab = factor(gamma_slab, levels = rev(levels(gamma_slab))))

for (i_basin in unique(GLODAP$basin)) {
  # i_basin <- unique(GLODAP$basin)[3]
  
  print(
    GLODAP %>%
      filter(basin == i_basin) %>%
      ggplot(aes(lat, gamma_slab)) +
      geom_bin2d(binwidth = 5) +
      scale_fill_viridis_c(
        option = "magma",
        direction = -1,
        trans = "log10"
      ) +
      scale_x_continuous(breaks = seq(-100, 100, 20),
                         limits = c(params_global$lat_min,
                                    params_global$lat_max)) +
      facet_grid(era ~ .) +
      labs(title = paste("MLR region: ", i_basin))
  )
  
}

Past versions of obs_gamma_slab-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
2b6c392	Donghe-Zhu	2021-03-10
9f58753	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
112dea0	Donghe-Zhu	2021-03-08
1843412	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
691ba81	Donghe-Zhu	2021-03-03
c5e45a2	Donghe-Zhu	2021-03-03
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
17dee1d	jens-daniel-mueller	2021-01-13
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of obs_gamma_slab-2.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
2b6c392	Donghe-Zhu	2021-03-10
9f58753	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
058e0a1	Donghe-Zhu	2021-03-08
112dea0	Donghe-Zhu	2021-03-08
1843412	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
691ba81	Donghe-Zhu	2021-03-03
c5e45a2	Donghe-Zhu	2021-03-03
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
17dee1d	jens-daniel-mueller	2021-01-13
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of obs_gamma_slab-3.png

Version	Author	Date
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Past versions of obs_gamma_slab-4.png

Version	Author	Date
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22

Past versions of obs_gamma_slab-5.png

Version	Author	Date
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22

8.1 Histograms

GLODAP_vars <- GLODAP %>% 
  select(params_local$MLR_target,
         params_local$MLR_predictors)

GLODAP_vars_long <- GLODAP_vars %>% 
  pivot_longer(
    cols = c(params_local$MLR_target,
             params_local$MLR_predictors),
    names_to = "variable",
    values_to = "value"
  )

GLODAP_vars_long %>% 
  ggplot(aes(value)) +
  geom_histogram() +
  facet_wrap(~ variable,
             ncol = 2,
             scales = "free")

Past versions of histogram_predictor-1.png

Version	Author	Date
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
b473472	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
a01e135	Donghe-Zhu	2021-07-07
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
dbe2a95	Donghe-Zhu	2021-05-28
d50b039	Donghe-Zhu	2021-05-28
441ebe5	Donghe-Zhu	2021-05-28
6262ad3	Donghe-Zhu	2021-05-28
a61aa77	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
94a833e	Donghe-Zhu	2021-05-27
5e0bd64	Donghe-Zhu	2021-05-27
af1eadd	Donghe-Zhu	2021-05-27
9179bfe	Donghe-Zhu	2021-05-27
28cbe5e	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
4623e38	Donghe-Zhu	2021-05-27
b81bb49	Donghe-Zhu	2021-05-27
951e188	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
1c24ff7	Donghe-Zhu	2021-03-10
94ce5a8	Donghe-Zhu	2021-03-10
db33928	Donghe-Zhu	2021-03-10
3d1f470	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
2093979	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
112dea0	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
ee69bc1	Donghe-Zhu	2021-03-05
a79291f	Donghe-Zhu	2021-03-05
e8c6f30	Donghe-Zhu	2021-03-04
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
c911669	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
e9a7418	Donghe-Zhu	2021-02-28
54d5b5b	Donghe-Zhu	2021-02-27
330f064	Donghe-Zhu	2021-02-27
5937141	Donghe-Zhu	2021-02-27
4414bbf	Donghe-Zhu	2021-02-27
a265efb	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
354c224	Donghe-Zhu	2021-02-24
1a0a88a	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
48f638e	Donghe-Zhu	2021-01-25
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
fa85b93	jens-daniel-mueller	2021-01-06
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_vars, GLODAP_vars_long)

9 Individual cruise sections

Zonal and meridional section plots are produce for each cruise individually and are available under:

/nfs/kryo/work/jenmueller/emlr_cant/model/v_XXX/figures/Cruise_sections_histograms/

if (params_local$subsetting == "GLODAP") {
  if (params_local$plot_all_figures == "y") {
    cruises <- GLODAP %>%
      group_by(cruise) %>%
      summarise(date_mean = mean(date, na.rm = TRUE),
                n = n()) %>%
      ungroup() %>%
      arrange(date_mean)
    
    GLODAP <- full_join(GLODAP, cruises)
    
    n <- 0
    for (i_cruise in unique(cruises$cruise)) {
      # i_cruise <- unique(cruises$cruise)[1]
      # n <- n + 1
      # print(n)
      
      GLODAP_cruise <- GLODAP %>%
        filter(cruise == i_cruise) %>%
        arrange(date)
      
      cruises_cruise <- cruises %>%
        filter(cruise == i_cruise)
      
      map_plot <-
        map +
        geom_point(data = GLODAP_cruise,
                   aes(lon, lat, col = date)) +
        scale_color_viridis_c(trans = "date") +
        labs(
          title = paste(
            "Mean date:",
            cruises_cruise$date_mean,
            "| cruise:",
            cruises_cruise$cruise,
            "| n(samples):",
            cruises_cruise$n
          )
        )
      
      
      lon_section <- GLODAP_cruise %>%
        ggplot(aes(lon, depth)) +
        scale_y_reverse() +
        scale_fill_viridis_c()
      
      lon_tco2 <- lon_section +
        stat_summary_2d(aes(z = tco2))
      
      lon_talk <- lon_section +
        stat_summary_2d(aes(z = talk))
      
      lon_phosphate <- lon_section +
        stat_summary_2d(aes(z = phosphate))
      
      lon_oxygen <- lon_section +
        stat_summary_2d(aes(z = oxygen))
      
      lon_aou <- lon_section +
        stat_summary_2d(aes(z = aou))
      
      lon_phosphate_star <- lon_section +
        stat_summary_2d(aes(z = phosphate_star))
      
      lon_nitrate <- lon_section +
        stat_summary_2d(aes(z = nitrate))
      
      lon_cstar <- lon_section +
        stat_summary_2d(aes(z = cstar_tref))
      
      
      lat_section <- GLODAP_cruise %>%
        ggplot(aes(lat, depth)) +
        scale_y_reverse() +
        scale_fill_viridis_c()
      
      lat_tco2 <- lat_section +
        stat_summary_2d(aes(z = tco2))
      
      lat_talk <- lat_section +
        stat_summary_2d(aes(z = talk))
      
      lat_phosphate <- lat_section +
        stat_summary_2d(aes(z = phosphate))
      
      lat_oxygen <- lat_section +
        stat_summary_2d(aes(z = oxygen))
      
      lat_aou <- lat_section +
        stat_summary_2d(aes(z = aou))
      
      lat_phosphate_star <- lat_section +
        stat_summary_2d(aes(z = phosphate_star))
      
      lat_nitrate <- lat_section +
        stat_summary_2d(aes(z = nitrate))
      
      lat_cstar <- lat_section +
        stat_summary_2d(aes(z = cstar_tref))
      
      
      hist_tco2 <- GLODAP_cruise %>%
        ggplot(aes(tco2)) +
        geom_histogram()
      
      hist_talk <- GLODAP_cruise %>%
        ggplot(aes(talk)) +
        geom_histogram()
      
      hist_phosphate <- GLODAP_cruise %>%
        ggplot(aes(phosphate)) +
        geom_histogram()
      
      hist_oxygen <- GLODAP_cruise %>%
        ggplot(aes(oxygen)) +
        geom_histogram()
      
      hist_aou <- GLODAP_cruise %>%
        ggplot(aes(aou)) +
        geom_histogram()
      
      hist_phosphate_star <- GLODAP_cruise %>%
        ggplot(aes(phosphate_star)) +
        geom_histogram()
      
      hist_nitrate <- GLODAP_cruise %>%
        ggplot(aes(nitrate)) +
        geom_histogram()
      
      hist_cstar <- GLODAP_cruise %>%
        ggplot(aes(cstar_tref)) +
        geom_histogram()
      
      (map_plot /
          ((hist_tco2 / hist_talk / hist_phosphate / hist_cstar) |
             (
               hist_oxygen / hist_phosphate_star / hist_nitrate / hist_aou
             )
          )) |
        ((
          lat_tco2 / lat_talk / lat_phosphate / lat_oxygen / lat_aou / lat_phosphate_star / lat_nitrate / lat_cstar
        ) |
          (
            lon_tco2 / lon_talk / lon_phosphate / lon_oxygen /  lon_aou / lon_phosphate_star / lon_nitrate / lon_cstar
          )
        )
      
      ggsave(
        path = paste(
          path_version_figures,
          "Cruise_sections_histograms/",
          sep = ""
        ),
        filename = paste(
          "Cruise_date",
          cruises_cruise$date_mean,
          "count",
          cruises_cruise$n,
          "cruiseID",
          cruises_cruise$cruise,
          ".png",
          sep = "_"
        ),
        width = 20,
        height = 12
      )
      
      rm(
        map_plot,
        lon_section,
        lat_section,
        lat_tco2,
        lat_talk,
        lat_phosphate,
        lon_tco2,
        lon_talk,
        lon_phosphate,
        GLODAP_cruise,
        cruises_cruise
      )
      
    }
    
  }
  
}

10 Write files

if (params_local$subsetting == "GLODAP") {
  # select relevant columns
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  
  GLODAP %>% write_csv(paste(
    path_version_data,
    "GLODAPv2.2020_MLR_fitting_ready.csv",
    sep = ""
  ))
  
}

if (params_local$subsetting == "random") {
  # select relevant columns
  if (params_local$model_resolution == "annual") {
  GLODAP <- GLODAP %>%
    select(
      year,
    #  month,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  }
  
  if (params_local$model_resolution == "month") {
  GLODAP <- GLODAP %>%
    select(
      year,
      month,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  }
  
  GLODAP %>% write_csv(paste(
    path_version_data,
    "GLODAPv2.2020_MLR_fitting_ready.csv",
    sep = ""
  ))
}

co2_atm_tref %>%  write_csv(paste(path_version_data,
                                  "co2_atm_tref.csv",
                                  sep = ""))

Session information

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] kableExtra_1.3.1 knitr_1.30       lubridate_1.7.9  marelac_2.1.10  
 [5] shape_1.4.5      ggforce_0.3.3    metR_0.9.0       scico_1.2.0     
 [9] patchwork_1.1.1  collapse_1.5.0   forcats_0.5.0    stringr_1.4.0   
[13] dplyr_1.0.5      purrr_0.3.4      readr_1.4.0      tidyr_1.1.2     
[17] tibble_3.0.4     ggplot2_3.3.3    tidyverse_1.3.0  workflowr_1.6.2 

loaded via a namespace (and not attached):
 [1] fs_1.5.0                 sf_0.9-8                 gsw_1.0-5               
 [4] RColorBrewer_1.1-2       webshot_0.5.2            httr_1.4.2              
 [7] rprojroot_2.0.2          tools_4.0.3              backports_1.1.10        
[10] R6_2.5.0                 KernSmooth_2.23-18       DBI_1.1.0               
[13] colorspace_2.0-0         withr_2.3.0              tidyselect_1.1.0        
[16] compiler_4.0.3           git2r_0.27.1             cli_2.2.0               
[19] rvest_0.3.6              xml2_1.3.2               labeling_0.4.2          
[22] scales_1.1.1             checkmate_2.0.0          classInt_0.4-3          
[25] digest_0.6.27            rmarkdown_2.5            oce_1.3-0               
[28] pkgconfig_2.0.3          htmltools_0.5.0          highr_0.8               
[31] dbplyr_1.4.4             rlang_0.4.10             readxl_1.3.1            
[34] rstudioapi_0.13          farver_2.0.3             generics_0.1.0          
[37] jsonlite_1.7.2           magrittr_2.0.1           Matrix_1.2-18           
[40] Rcpp_1.0.5               munsell_0.5.0            fansi_0.4.1             
[43] lifecycle_1.0.0          stringi_1.5.3            whisker_0.4             
[46] yaml_2.2.1               MASS_7.3-53              grid_4.0.3              
[49] blob_1.2.1               parallel_4.0.3           promises_1.1.1          
[52] crayon_1.3.4             lattice_0.20-41          haven_2.3.1             
[55] hms_0.5.3                seacarb_3.2.15           pillar_1.4.7            
[58] reprex_0.3.0             glue_1.4.2               evaluate_0.14           
[61] RcppArmadillo_0.10.1.2.2 data.table_1.13.6        modelr_0.1.8            
[64] vctrs_0.3.6              tweenr_1.0.2             httpuv_1.5.4            
[67] testthat_3.0.1           cellranger_1.1.0         gtable_0.3.0            
[70] polyclip_1.10-0          assertthat_0.2.1         xfun_0.20               
[73] broom_0.7.5              RcppEigen_0.3.3.9.1      e1071_1.7-4             
[76] later_1.1.0.1            viridisLite_0.3.0        class_7.3-17            
[79] units_0.6-7              ellipsis_0.3.1           here_1.0.1