Budgets
Jens Daniel Müller
11 November, 2022
Last updated: 2022-11-11
Checks: 7 0
Knit directory:
emlr_obs_analysis/analysis/
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| File | Version | Author | Date | Message |
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| html | ec60f68 | jens-daniel-mueller | 2022-11-07 | Build site. |
| html | e99640e | jens-daniel-mueller | 2022-07-29 | Build site. |
| html | 08c00b4 | jens-daniel-mueller | 2022-07-16 | Build site. |
| html | 692c937 | jens-daniel-mueller | 2022-07-16 | Build site. |
| html | 1aabfea | jens-daniel-mueller | 2022-07-12 | Build site. |
| Rmd | 567c3ed | jens-daniel-mueller | 2022-07-12 | revised bias decomposition |
| html | 781e859 | jens-daniel-mueller | 2022-07-04 | Build site. |
| html | b44c72a | jens-daniel-mueller | 2022-07-03 | Build site. |
| html | 157af41 | jens-daniel-mueller | 2022-07-03 | Build site. |
| html | 6e173bf | jens-daniel-mueller | 2022-06-30 | updated regional budget plots |
| html | a13a7cf | jens-daniel-mueller | 2022-06-28 | Build site. |
| html | b52b159 | jens-daniel-mueller | 2022-06-27 | Build site. |
| html | 09b0780 | jens-daniel-mueller | 2022-05-24 | Build site. |
| html | 25da2fb | jens-daniel-mueller | 2022-05-24 | Build site. |
| html | e09320d | jens-daniel-mueller | 2022-04-12 | Build site. |
| html | 8dca96a | jens-daniel-mueller | 2022-04-12 | Build site. |
| Rmd | e5e9288 | jens-daniel-mueller | 2022-04-12 | 3 data adjustment procedures implemented |
version_id_pattern <- "c"
config <- "MLR_basins"1 Read files
print(version_id_pattern)[1] "c"# identify required version IDs
Version_IDs_1 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
pattern = paste0("v_1", "c"))
Version_IDs_2 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
pattern = paste0("v_2", "c"))
Version_IDs_3 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
pattern = paste0("v_3", "c"))
Version_IDs <- c(Version_IDs_1, Version_IDs_2, Version_IDs_3)
# print(Version_IDs)1.1 Global
for (i_Version_IDs in Version_IDs) {
# i_Version_IDs <- Version_IDs[1]
# print(i_Version_IDs)
path_version_data <-
paste(path_observations,
i_Version_IDs,
"/data/",
sep = "")
# load and join data files
dcant_budget_global <-
read_csv(paste(path_version_data,
"dcant_budget_global.csv",
sep = ""))
dcant_budget_global_mod_truth <-
read_csv(paste(
path_version_data,
"dcant_budget_global_mod_truth.csv",
sep = ""
))
dcant_budget_global_bias <-
read_csv(paste(path_version_data,
"dcant_budget_global_bias.csv",
sep = ""))
lm_best_predictor_counts <-
read_csv(paste(path_version_data,
"lm_best_predictor_counts.csv",
sep = ""))
lm_best_dcant <-
read_csv(paste(path_version_data,
"lm_best_dcant.csv",
sep = ""))
dcant_budget_global <- bind_rows(dcant_budget_global,
dcant_budget_global_mod_truth)
dcant_budget_global <- dcant_budget_global %>%
mutate(Version_ID = i_Version_IDs)
dcant_budget_global_bias <- dcant_budget_global_bias %>%
mutate(Version_ID = i_Version_IDs)
lm_best_predictor_counts <- lm_best_predictor_counts %>%
mutate(Version_ID = i_Version_IDs)
lm_best_dcant <- lm_best_dcant %>%
mutate(Version_ID = i_Version_IDs)
params_local <-
read_rds(paste(path_version_data,
"params_local.rds",
sep = ""))
params_local <- bind_cols(
Version_ID = i_Version_IDs,
MLR_basins := str_c(params_local$MLR_basins, collapse = "|"),
tref1 = params_local$tref1,
tref2 = params_local$tref2)
tref <- read_csv(paste(path_version_data,
"tref.csv",
sep = ""))
params_local <- params_local %>%
mutate(
median_year_1 = sort(tref$median_year)[1],
median_year_2 = sort(tref$median_year)[2],
duration = median_year_2 - median_year_1,
period = paste(median_year_1, "-", median_year_2)
)
if (exists("dcant_budget_global_all")) {
dcant_budget_global_all <-
bind_rows(dcant_budget_global_all, dcant_budget_global)
}
if (!exists("dcant_budget_global_all")) {
dcant_budget_global_all <- dcant_budget_global
}
if (exists("dcant_budget_global_bias_all")) {
dcant_budget_global_bias_all <-
bind_rows(dcant_budget_global_bias_all,
dcant_budget_global_bias)
}
if (!exists("dcant_budget_global_bias_all")) {
dcant_budget_global_bias_all <- dcant_budget_global_bias
}
if (exists("lm_best_predictor_counts_all")) {
lm_best_predictor_counts_all <-
bind_rows(lm_best_predictor_counts_all, lm_best_predictor_counts)
}
if (!exists("lm_best_predictor_counts_all")) {
lm_best_predictor_counts_all <- lm_best_predictor_counts
}
if (exists("lm_best_dcant_all")) {
lm_best_dcant_all <-
bind_rows(lm_best_dcant_all, lm_best_dcant)
}
if (!exists("lm_best_dcant_all")) {
lm_best_dcant_all <- lm_best_dcant
}
if (exists("params_local_all")) {
params_local_all <- bind_rows(params_local_all, params_local)
}
if (!exists("params_local_all")) {
params_local_all <- params_local
}
}
rm(
dcant_budget_global,
dcant_budget_global_bias,
dcant_budget_global_mod_truth,
lm_best_predictor_counts,
lm_best_dcant,
params_local,
tref
)1.2 Basins
# Version_IDs <- Version_IDs[1:length(Version_IDs)-1]
for (i_Version_IDs in Version_IDs) {
# i_Version_IDs <- Version_IDs[1]
# print(i_Version_IDs)
path_version_data <-
paste(path_observations,
i_Version_IDs,
"/data/",
sep = "")
# load and join data files
dcant_budget_basin_AIP <-
read_csv(paste(path_version_data,
"dcant_budget_basin_AIP.csv",
sep = ""))
dcant_budget_basin_AIP_mod_truth <-
read_csv(paste(
path_version_data,
"dcant_budget_basin_AIP_mod_truth.csv",
sep = ""
))
dcant_budget_basin_AIP <- bind_rows(dcant_budget_basin_AIP,
dcant_budget_basin_AIP_mod_truth)
dcant_budget_basin_AIP_bias <-
read_csv(paste(path_version_data,
"dcant_budget_basin_AIP_bias.csv",
sep = ""))
dcant_slab_budget_bias <-
read_csv(paste0(path_version_data,
"dcant_slab_budget_bias.csv"))
dcant_slab_budget <-
read_csv(paste0(path_version_data,
"dcant_slab_budget.csv"))
dcant_budget_basin_AIP <- dcant_budget_basin_AIP %>%
mutate(Version_ID = i_Version_IDs)
dcant_budget_basin_AIP_bias <- dcant_budget_basin_AIP_bias %>%
mutate(Version_ID = i_Version_IDs)
dcant_slab_budget <- dcant_slab_budget %>%
mutate(Version_ID = i_Version_IDs)
dcant_slab_budget_bias <- dcant_slab_budget_bias %>%
mutate(Version_ID = i_Version_IDs)
if (exists("dcant_budget_basin_AIP_all")) {
dcant_budget_basin_AIP_all <-
bind_rows(dcant_budget_basin_AIP_all, dcant_budget_basin_AIP)
}
if (!exists("dcant_budget_basin_AIP_all")) {
dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP
}
if (exists("dcant_budget_basin_AIP_bias_all")) {
dcant_budget_basin_AIP_bias_all <-
bind_rows(dcant_budget_basin_AIP_bias_all,
dcant_budget_basin_AIP_bias)
}
if (!exists("dcant_budget_basin_AIP_bias_all")) {
dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias
}
if (exists("dcant_slab_budget_all")) {
dcant_slab_budget_all <-
bind_rows(dcant_slab_budget_all, dcant_slab_budget)
}
if (!exists("dcant_slab_budget_all")) {
dcant_slab_budget_all <- dcant_slab_budget
}
if (exists("dcant_slab_budget_bias_all")) {
dcant_slab_budget_bias_all <-
bind_rows(dcant_slab_budget_bias_all,
dcant_slab_budget_bias)
}
if (!exists("dcant_slab_budget_bias_all")) {
dcant_slab_budget_bias_all <- dcant_slab_budget_bias
}
}
rm(
dcant_budget_basin_AIP,
dcant_budget_basin_AIP_bias,
dcant_budget_basin_AIP_mod_truth,
dcant_slab_budget,
dcant_slab_budget_bias
)1.3 Basins hemisphere
# Version_IDs <- Version_IDs[1:length(Version_IDs)-1]
for (i_Version_IDs in Version_IDs) {
# i_Version_IDs <- Version_IDs[1]
# print(i_Version_IDs)
path_version_data <-
paste(path_observations,
i_Version_IDs,
"/data/",
sep = "")
# load and join data files
dcant_budget_basin_MLR <-
read_csv(paste(path_version_data,
"dcant_budget_basin_MLR.csv",
sep = ""))
dcant_budget_basin_MLR_mod_truth <-
read_csv(paste(
path_version_data,
"dcant_budget_basin_MLR_mod_truth.csv",
sep = ""
))
dcant_budget_basin_MLR <- bind_rows(dcant_budget_basin_MLR,
dcant_budget_basin_MLR_mod_truth)
dcant_budget_basin_MLR <- dcant_budget_basin_MLR %>%
mutate(Version_ID = i_Version_IDs)
if (exists("dcant_budget_basin_MLR_all")) {
dcant_budget_basin_MLR_all <-
bind_rows(dcant_budget_basin_MLR_all, dcant_budget_basin_MLR)
}
if (!exists("dcant_budget_basin_MLR_all")) {
dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR
}
}
rm(
dcant_budget_basin_MLR,
dcant_budget_basin_MLR_mod_truth
)1.4 Steady state
for (i_Version_IDs in Version_IDs) {
# i_Version_IDs <- Version_IDs[1]
# print(i_Version_IDs)
path_version_data <-
paste(path_observations,
i_Version_IDs,
"/data/",
sep = "")
# load and join data files
dcant_obs_budget <-
read_csv(paste0(path_version_data,
"anom_dcant_obs_budget.csv"))
dcant_obs_budget <- dcant_obs_budget %>%
mutate(Version_ID = i_Version_IDs)
if (exists("dcant_obs_budget_all")) {
dcant_obs_budget_all <-
bind_rows(dcant_obs_budget_all, dcant_obs_budget)
}
if (!exists("dcant_obs_budget_all")) {
dcant_obs_budget_all <- dcant_obs_budget
}
}
rm(dcant_obs_budget)1.5 Atm CO2
co2_atm <-
read_csv(paste(path_preprocessing,
"co2_atm.csv",
sep = ""))all_predictors <- c("saltempaouoxygenphosphatenitratesilicate")
params_local_all <- params_local_all %>%
mutate(MLR_predictors = str_remove_all(all_predictors,
MLR_predictors))dcant_budget_global_all <- dcant_budget_global_all %>%
filter(estimate == "dcant",
method == "total") %>%
select(-c(estimate, method)) %>%
rename(dcant = value)
dcant_budget_global_all_depth <- dcant_budget_global_all
dcant_budget_global_all <- dcant_budget_global_all %>%
filter(inv_depth == params_global$inventory_depth_standard)
dcant_budget_global_bias_all <- dcant_budget_global_bias_all %>%
filter(estimate == "dcant") %>%
select(-c(estimate))
dcant_budget_global_bias_all_depth <- dcant_budget_global_bias_all
dcant_budget_global_bias_all <- dcant_budget_global_bias_all %>%
filter(inv_depth == params_global$inventory_depth_standard)dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP_all %>%
filter(estimate == "dcant",
method == "total") %>%
select(-c(estimate, method)) %>%
rename(dcant = value)
dcant_budget_basin_AIP_all_depth <- dcant_budget_basin_AIP_all
dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP_all %>%
filter(inv_depth == params_global$inventory_depth_standard)
dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias_all %>%
filter(estimate == "dcant") %>%
select(-c(estimate))
dcant_budget_basin_AIP_bias_all_depth <- dcant_budget_basin_AIP_bias_all
dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias_all %>%
filter(inv_depth == params_global$inventory_depth_standard)dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR_all %>%
filter(estimate == "dcant",
method == "total") %>%
select(-c(estimate, method)) %>%
rename(dcant = value)
# dcant_budget_basin_MLR_all_depth <- dcant_budget_basin_MLR_all
dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR_all %>%
filter(inv_depth == params_global$inventory_depth_standard)
# dcant_budget_basin_MLR_bias_all <- dcant_budget_basin_MLR_bias_all %>%
# filter(estimate == "dcant") %>%
# select(-c(estimate))
#
# dcant_budget_basin_MLR_bias_all_depth <- dcant_budget_basin_MLR_bias_all
#
# dcant_budget_basin_MLR_bias_all <- dcant_budget_basin_MLR_bias_all %>%
# filter(inv_depth == params_global$inventory_depth_standard)2 Bias thresholds
global_bias_rel_max <- 10
global_bias_rel_max[1] 10regional_bias_rel_max <- 20
regional_bias_rel_max[1] 203 Individual cases
3.1 Global
3.1.1 Absoulte values
legend_title = expression(atop(Delta * C[ant],
(mu * mol ~ kg ^ {
-1
})))
dcant_budget_global_all %>%
ggplot(aes(period, dcant, col = MLR_basins)) +
geom_jitter(width = 0.05, height = 0) +
scale_color_brewer(palette = "Dark2") +
facet_grid(. ~ data_source) +
ylim(0,NA) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank())
3.1.2 Biases
dcant_budget_global_bias_all %>%
ggplot(aes(period, dcant_bias, col=MLR_basins)) +
geom_hline(yintercept = 0) +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(atop(Delta * C[ant] ~ bias,
(PgC)))) +
geom_point() +
theme(axis.text.x = element_blank(),
axis.title.x = element_blank())
p_global_bias <-
dcant_budget_global_bias_all %>%
ggplot() +
geom_hline(yintercept = global_bias_rel_max * c(-1, 1),
linetype = 2) +
geom_hline(yintercept = 0) +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
title = "Model-based assesment") +
theme(axis.title.x = element_blank()) +
geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
alpha = 0.7) +
theme(axis.text.x = element_text(angle = 45, hjust = 1),
axis.title.x = element_blank())
p_global_bias
dcant_budget_global_bias_all %>%
group_by(period) %>%
summarise(
dcant_bias_sd = sd(dcant_bias),
dcant_bias = mean(dcant_bias),
dcant_bias_rel_sd = sd(dcant_bias_rel),
dcant_bias_rel = mean(dcant_bias_rel)
) %>%
ungroup() %>%
kable() %>%
kable_styling() %>%
scroll_box(height = "300px")| period | dcant_bias_sd | dcant_bias | dcant_bias_rel_sd | dcant_bias_rel |
|---|---|---|---|---|
| 1994 - 2004 | 1.4799236 | 1.390667 | 8.389590 | 7.883598 |
| 1994 - 2014 | 1.6943235 | 2.569333 | 4.404501 | 6.679145 |
| 2004 - 2014 | 0.8601962 | 1.279500 | 4.129999 | 6.143173 |
3.2 Basins
3.2.1 Absoulte values
dcant_budget_basin_AIP_all %>%
ggplot(aes(period, dcant, col = MLR_basins)) +
geom_jitter(width = 0.05, height = 0) +
scale_color_brewer(palette = "Dark2") +
facet_grid(basin_AIP ~ data_source) +
ylim(0,NA) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank())
3.2.2 Biases
dcant_budget_basin_AIP_bias_all %>%
ggplot(aes(period, dcant_bias, col=MLR_basins)) +
geom_hline(yintercept = 0) +
geom_point() +
facet_grid(basin_AIP ~ .)
dcant_budget_basin_AIP_bias_all %>%
ggplot() +
geom_tile(aes(y = 0, height = regional_bias_rel_max * 2,
x = "2004 - 2014", width = Inf,
fill = "bias\nthreshold"), alpha = 0.5) +
geom_hline(yintercept = 0) +
scale_fill_manual(values = "grey70", name = "") +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(Delta ~ C[ant] ~ bias)) +
theme(axis.title.x = element_blank()) +
geom_jitter(aes(period, dcant_bias_rel, col = MLR_basins),
width = 0.05, height = 0) +
facet_grid(. ~ basin_AIP)
p_regional_bias <-
dcant_budget_basin_AIP_bias_all %>%
ggplot() +
geom_hline(yintercept = regional_bias_rel_max * c(-1,1),
linetype = 2) +
geom_hline(yintercept = 0) +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
title = "Model-based assesment") +
theme(axis.title.x = element_blank()) +
geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
alpha = 0.7) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank()) +
facet_grid(. ~ basin_AIP) +
theme(
strip.background = element_blank(),
strip.text.x = element_blank()
)
p_regional_bias
3.3 Slab budgets
3.3.1 Absolute values
dcant_slab_budget_all %>%
filter(data_source == "obs",
period != "1994 - 2014") %>%
ggplot(aes(MLR_basins, dcant, fill = gamma_slab)) +
geom_hline(yintercept = 0, col = "red") +
geom_col() +
scale_fill_scico_d(direction = -1) +
facet_grid(basin_AIP ~ period)
dcant_slab_budget_all %>%
filter(data_source == "obs",
period != "1994 - 2014") %>%
group_by(basin_AIP) %>%
group_split() %>%
map(
~ ggplot(data = .x,
aes(MLR_basins, dcant, fill = gamma_slab)) +
geom_hline(yintercept = 0) +
geom_col() +
scale_fill_scico_d(direction = -1) +
labs(title = paste("data_source:", unique(.x$basin_AIP))) +
facet_grid(gamma_slab ~ period)
)[[1]]
[[2]]
[[3]]
3.3.2 Bias
dcant_slab_budget_bias_all %>%
filter(period != "1994 - 2014") %>%
group_by(basin_AIP) %>%
group_split() %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(gamma_slab, dcant_bias, fill = gamma_slab)) +
geom_col() +
coord_flip() +
scale_x_discrete(limits = rev) +
scale_fill_scico_d(direction = -1) +
facet_grid(period ~ MLR_basins) +
labs(title = paste("data_source:", unique(.x$basin_AIP)))
)[[1]]Warning: Removed 40 rows containing missing values (position_stack).
[[2]]Warning: Removed 24 rows containing missing values (position_stack).
[[3]]Warning: Removed 108 rows containing missing values (position_stack).
3.3.3 Spread
dcant_slab_budget_all %>%
filter(period != "1994 - 2014",
data_source != "mod_truth") %>%
group_by(data_source, basin_AIP, gamma_slab, period) %>%
summarise(dcant_range = max(dcant) - min(dcant)) %>%
ungroup() %>%
group_split(basin_AIP) %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(gamma_slab, dcant_range, fill = gamma_slab)) +
geom_col() +
coord_flip() +
scale_x_discrete(limits = rev) +
scale_fill_scico_d(direction = -1) +
facet_grid(period ~ data_source) +
labs(title = paste("data_source:", unique(.x$basin_AIP)))
)`summarise()` has grouped output by 'data_source', 'basin_AIP', 'gamma_slab'.
You can override using the `.groups` argument.[[1]]
[[2]]
[[3]]
3.4 Basins hemisphere
3.4.1 Absoulte values
dcant_budget_basin_MLR_all %>%
ggplot(aes(period, dcant, col = MLR_basins)) +
geom_jitter(width = 0.05, height = 0) +
scale_color_brewer(palette = "Dark2") +
facet_grid(basin ~ data_source) +
ylim(0,NA) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank())
3.4.2 Biases
dcant_budget_basin_MLR_bias_all <-
dcant_budget_basin_MLR_all %>%
filter(data_source %in% c("mod", "mod_truth")) %>%
pivot_wider(names_from = data_source,
values_from = dcant) %>%
mutate(dcant_bias = mod - mod_truth,
dcant_bias_rel = 100*(mod - mod_truth)/mod_truth)
dcant_budget_basin_MLR_bias_all %>%
ggplot(aes(period, dcant_bias, col=MLR_basins)) +
geom_hline(yintercept = 0) +
geom_point() +
facet_grid(basin ~ .)
dcant_budget_basin_MLR_bias_all %>%
ggplot() +
geom_tile(aes(y = 0, height = regional_bias_rel_max * 2,
x = "2004 - 2014", width = Inf,
fill = "bias\nthreshold"), alpha = 0.5) +
geom_hline(yintercept = 0) +
scale_fill_manual(values = "grey70", name = "") +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(Delta ~ C[ant] ~ bias)) +
theme(axis.title.x = element_blank()) +
geom_jitter(aes(period, dcant_bias_rel, col = MLR_basins),
width = 0.05, height = 0) +
facet_grid(. ~ basin)
p_regional_bias <-
dcant_budget_basin_MLR_bias_all %>%
ggplot() +
geom_hline(yintercept = regional_bias_rel_max * c(-1,1),
linetype = 2) +
geom_hline(yintercept = 0) +
scale_color_brewer(palette = "Dark2") +
labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
title = "Model-based assesment") +
theme(axis.title.x = element_blank()) +
geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
alpha = 0.7) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank()) +
facet_grid(. ~ basin) +
theme(
strip.background = element_blank(),
strip.text.x = element_blank()
)
p_regional_bias
dcant_budget_basin_MLR_bias_all %>%
group_by(period, basin) %>%
summarise(
dcant_bias_sd = sd(dcant_bias),
dcant_bias = mean(dcant_bias),
dcant_bias_rel_sd = sd(dcant_bias_rel),
dcant_bias_rel = mean(dcant_bias_rel)
) %>%
ungroup() %>%
kable() %>%
kable_styling() %>%
scroll_box(height = "300px")`summarise()` has grouped output by 'period'. You can override using the
`.groups` argument.| period | basin | dcant_bias_sd | dcant_bias | dcant_bias_rel_sd | dcant_bias_rel |
|---|---|---|---|---|---|
| 1994 - 2004 | Indian | 1.0001941 | 0.2205000 | 20.746611 | 4.573740 |
| 1994 - 2004 | N_Atlantic | 0.2338584 | 0.1958333 | 11.986593 | 10.037588 |
| 1994 - 2004 | N_Pacific | 0.1802414 | 0.4681667 | 6.636282 | 17.237359 |
| 1994 - 2004 | S_Atlantic | 0.2843756 | 0.0945000 | 11.375025 | 3.780000 |
| 1994 - 2004 | S_Pacific | 0.8079710 | 0.4120000 | 14.295312 | 7.289455 |
| 1994 - 2014 | Indian | 1.2863102 | 0.7363333 | 12.311545 | 7.047601 |
| 1994 - 2014 | N_Atlantic | 0.3466887 | -0.0436667 | 8.070035 | -1.016449 |
| 1994 - 2014 | N_Pacific | 0.2595725 | 0.5746667 | 4.446257 | 9.843554 |
| 1994 - 2014 | S_Atlantic | 0.3464309 | 0.4520000 | 6.550027 | 8.546039 |
| 1994 - 2014 | S_Pacific | 1.2876691 | 0.8500000 | 10.222029 | 6.747638 |
| 2004 - 2014 | Indian | 0.5351501 | 0.4660000 | 9.512088 | 8.282972 |
| 2004 - 2014 | N_Atlantic | 0.1794310 | -0.1273333 | 7.651640 | -5.429993 |
| 2004 - 2014 | N_Pacific | 0.2125387 | 0.1375000 | 6.807774 | 4.404228 |
| 2004 - 2014 | S_Atlantic | 0.2096175 | 0.4125000 | 7.515866 | 14.790247 |
| 2004 - 2014 | S_Pacific | 0.5030311 | 0.3913333 | 7.243068 | 5.634749 |
4 Ensemble
4.1 Global
dcant_budget_global_all_in <- dcant_budget_global_all %>%
filter(data_source %in% c("mod", "obs"))
dcant_budget_global_ensemble <- dcant_budget_global_all_in %>%
group_by(data_source, period, tref2) %>%
summarise(dcant_mean = mean(dcant),
dcant_sd = sd(dcant),
dcant_range = max(dcant)- min(dcant)) %>%
ungroup()`summarise()` has grouped output by 'data_source', 'period'. You can override
using the `.groups` argument.4.1.1 Mean
legend_title = expression(Delta * C[ant]~(PgC))
ggplot() +
geom_col(data = dcant_budget_global_ensemble,
aes(x = period,
y = dcant_mean),
fill = "darkgrey") +
geom_errorbar(
data = dcant_budget_global_ensemble,
aes(
x = period,
y = dcant_mean,
ymax = dcant_mean + dcant_sd,
ymin = dcant_mean - dcant_sd
),
width = 0.1
) +
geom_point(
data = dcant_budget_global_all,
aes(period, dcant, col = MLR_basins),
alpha = 0.7,
position = position_jitter(width = 0.2, height = 0)
) +
scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
scale_color_brewer(palette = "Dark2") +
facet_grid(. ~ data_source) +
labs(y = legend_title) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank())
p_global_dcant <- ggplot() +
geom_col(data = dcant_budget_global_ensemble %>%
filter(data_source == "obs"),
aes(x = period,
y = dcant_mean),
fill = "darkgrey") +
geom_point(
data = dcant_budget_global_all %>%
filter(data_source == "obs"),
aes(period, dcant, col = MLR_basins),
alpha = 0.7,
position = position_jitter(width = 0.1, height = 0)
) +
geom_errorbar(
data = dcant_budget_global_ensemble %>%
filter(data_source == "obs"),
aes(
x = period,
y = dcant_mean,
ymax = dcant_mean + dcant_sd,
ymin = dcant_mean - dcant_sd
),
width = 0.1
) +
scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
scale_color_brewer(palette = "Dark2") +
labs(y = legend_title,
title = "Observation-based results") +
theme(axis.text.x = element_blank(),
axis.title.x = element_blank())
p_global_dcant_bias <-
p_global_dcant / p_global_bias +
plot_layout(guides = 'collect',
heights = c(2,1))
p_global_dcant_bias
# ggsave(plot = p_global_dcant_bias,
# path = here::here("output/publication"),
# filename = "Fig_global_dcant_budget.png",
# height = 5,
# width = 5)
rm(p_global_bias, p_global_dcant, p_global_dcant_bias)4.1.2 Mean vs atm CO2
dcant_ensemble <- dcant_budget_global_ensemble %>%
filter(data_source == "obs",
period != "1994 - 2014") %>%
select(year = tref2, dcant_mean, dcant_sd)
tcant_S04 <- bind_cols(year = 1994, dcant_mean = 118, dcant_sd = 19)
tcant_ensemble <- full_join(dcant_ensemble, tcant_S04)Joining, by = c("year", "dcant_mean", "dcant_sd")tcant_ensemble <- left_join(tcant_ensemble, co2_atm)Joining, by = "year"co2_atm_pi <- bind_cols(pCO2 = 280, dcant_mean = 0, year = 1750, dcant_sd = 0)
tcant_ensemble <- full_join(tcant_ensemble, co2_atm_pi)Joining, by = c("year", "dcant_mean", "dcant_sd", "pCO2")tcant_ensemble <- tcant_ensemble %>%
arrange(year) %>%
mutate(tcant = cumsum(dcant_mean),
tcant_sd = cumsum(dcant_sd))
tcant_ensemble %>%
ggplot(aes(pCO2, tcant, ymin = tcant - tcant_sd, ymax = tcant + tcant_sd)) +
geom_ribbon(fill = "grey80") +
geom_point() +
geom_line() +
scale_x_continuous(breaks = seq(280, 400, 30),
sec.axis = dup_axis(labels = c(1750, 1940, 1980, 2000, 2015),
name = "Year")) +
geom_text(aes(label = year), nudge_x = -5, nudge_y = 5) +
labs(x = expression(Atmospheric~pCO[2]~(µatm)),
y = expression(Total~oceanic~C[ant]~(PgC)))
# ggsave(path = "output/publication",
# filename = "Fig_global_dcant_budget_vs_atm_pCO2.png",
# height = 4,
# width = 7)4.1.3 Sum decades
dcant_budget_global_all_in_sum <-
dcant_budget_global_all_in %>%
filter(period != "1994 - 2014") %>%
arrange(tref1) %>%
group_by(data_source, MLR_basins) %>%
mutate(dcant = dcant + lag(dcant)) %>%
ungroup() %>%
drop_na() %>%
mutate(estimate = "sum")
dcant_budget_global_all_in_sum <-
bind_rows(
dcant_budget_global_all_in_sum,
dcant_budget_global_all_in %>%
filter(period == "1994 - 2014") %>%
mutate(estimate = "direct")
)
ggplot() +
geom_point(
data = dcant_budget_global_all_in_sum,
aes(estimate, dcant, col = MLR_basins),
alpha = 0.7,
position = position_jitter(width = 0, height = 0)
) +
scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
scale_color_brewer(palette = "Dark2") +
facet_grid(. ~ data_source) +
theme(axis.text.x = element_text(angle = 45, hjust=1),
axis.title.x = element_blank())
4.1.4 Mean bias
dcant_budget_global_ensemble_bias <- full_join(
dcant_budget_global_ensemble %>%
filter(data_source == "mod") %>%
select(period, dcant_mean, dcant_sd),
dcant_budget_global_all %>%
filter(data_source == "mod_truth",
MLR_basins == unique(dcant_budget_global_all$MLR_basins)[1]) %>%
select(period, dcant)
)Joining, by = "period"dcant_budget_global_ensemble_bias <- dcant_budget_global_ensemble_bias %>%
mutate(dcant_mean_bias = dcant_mean - dcant,
dcant_mean_bias_rel = 100 * dcant_mean_bias / dcant)
dcant_budget_global_ensemble_bias %>%
ggplot(aes(period, dcant_mean_bias)) +
geom_hline(yintercept = 0) +
geom_point()
dcant_budget_global_ensemble_bias %>%
ggplot(aes(period, dcant_mean_bias_rel)) +
geom_hline(yintercept = 0) +
geom_point()
4.1.5 Vertical patterns
4.1.5.1 Absoulte values
dcant_budget_global_all_depth %>%
filter(data_source != "mod_truth") %>%
group_by(data_source) %>%
group_split() %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(dcant, MLR_basins, fill=period)) +
geom_vline(xintercept = 0) +
geom_col(position = "dodge") +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ .) +
labs(title = paste("data_source:", unique(.x$data_source)))
)[[1]]
[[2]]
4.1.5.2 Biases
dcant_budget_global_bias_all_depth %>%
ggplot(aes(dcant_bias, MLR_basins, fill = period)) +
geom_vline(xintercept = 0) +
geom_col(position = "dodge") +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ .)
dcant_budget_global_bias_all_depth %>%
ggplot(aes(dcant_bias_rel, MLR_basins, fill = period)) +
geom_vline(xintercept = 0) +
geom_col(position = "dodge") +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ .)
rm(dcant_budget_global_all,
dcant_budget_global_all_depth,
dcant_budget_global_bias_all,
dcant_budget_global_bias_all_depth,
dcant_budget_global_ensemble,
dcant_budget_global_ensemble_bias)4.2 Basins
dcant_budget_basin_AIP_ensemble <- dcant_budget_basin_AIP_all %>%
filter(data_source %in% c("mod", "obs")) %>%
group_by(basin_AIP, data_source, period) %>%
summarise(dcant_mean = mean(dcant),
dcant_sd = sd(dcant),
dcant_range = max(dcant)- min(dcant)) %>%
ungroup()`summarise()` has grouped output by 'basin_AIP', 'data_source'. You can override
using the `.groups` argument.4.2.1 Mean
dcant_budget_basin_AIP_ensemble %>%
ggplot(aes(period, dcant_mean, col=basin_AIP)) +
geom_pointrange(aes(ymax = dcant_mean + dcant_sd,
ymin = dcant_mean - dcant_sd),
shape = 21) +
facet_grid(. ~ data_source)
p_regional_dcant <- ggplot() +
geom_col(
data = dcant_budget_basin_AIP_ensemble %>%
filter(data_source == "obs"),
aes(x = period,
y = dcant_mean),
fill = "darkgrey"
) +
geom_point(
data = dcant_budget_basin_AIP_all %>%
filter(data_source == "obs"),
aes(period, dcant, col = MLR_basins),
position = position_jitter(width = 0.1, height = 0),
alpha = 0.7
) +
geom_errorbar(
data = dcant_budget_basin_AIP_ensemble %>%
filter(data_source == "obs"),
aes(
x = period,
y = dcant_mean,
ymax = dcant_mean + dcant_sd,
ymin = dcant_mean - dcant_sd
),
width = 0.1
) +
scale_y_continuous(limits = c(0, 35), expand = c(0, 0)) +
scale_color_brewer(palette = "Dark2") +
labs(y = legend_title,
title = "Observation-based results") +
theme(axis.text.x = element_blank(),
axis.title.x = element_blank()) +
facet_grid(. ~ basin_AIP)
p_regional_dcant_bias <-
p_regional_dcant / p_regional_bias +
plot_layout(guides = 'collect',
heights = c(2,1))
p_regional_dcant_bias
# ggsave(plot = p_regional_dcant_bias,
# path = "output/publication",
# filename = "Fig_regional_dcant_budget.png",
# height = 5,
# width = 10)
rm(p_regional_bias, p_regional_dcant, p_regional_dcant_bias)4.2.2 Mean bias
dcant_budget_basin_AIP_ensemble_bias <- full_join(
dcant_budget_basin_AIP_ensemble %>%
filter(data_source == "mod") %>%
select(basin_AIP, period, dcant_mean, dcant_sd),
dcant_budget_basin_AIP_all %>%
filter(data_source == "mod_truth",
MLR_basins == unique(dcant_budget_basin_AIP_all$MLR_basins)[1]) %>%
select(basin_AIP, period, dcant)
)Joining, by = c("basin_AIP", "period")dcant_budget_basin_AIP_ensemble_bias <- dcant_budget_basin_AIP_ensemble_bias %>%
mutate(dcant_mean_bias = dcant_mean - dcant,
dcant_mean_bias_rel = 100 * dcant_mean_bias / dcant)
dcant_budget_basin_AIP_ensemble_bias %>%
ggplot(aes(period, dcant_mean_bias, col = basin_AIP)) +
geom_hline(yintercept = 0) +
geom_point()
dcant_budget_basin_AIP_ensemble_bias %>%
ggplot(aes(period, dcant_mean_bias_rel, col = basin_AIP)) +
geom_hline(yintercept = 0) +
geom_point()
4.2.3 Vertical patterns
4.2.3.1 Absoulte values
dcant_budget_basin_AIP_all_depth %>%
filter(data_source != "mod_truth") %>%
group_by(data_source) %>%
group_split() %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(dcant, MLR_basins, fill = basin_AIP)) +
geom_vline(xintercept = 0) +
geom_col() +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period) +
labs(title = paste("data_source:", unique(.x$data_source)))
)[[1]]
[[2]]
4.2.3.2 Biases
dcant_budget_basin_AIP_bias_all_depth %>%
ggplot(aes(dcant_bias, MLR_basins, fill = basin_AIP)) +
geom_vline(xintercept = 0) +
geom_col() +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_basin_AIP_bias_all_depth %>%
ggplot(aes(dcant_bias_rel, MLR_basins, fill = basin_AIP)) +
geom_vline(xintercept = 0) +
geom_col(position = "dodge") +
scale_fill_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
5 Steady state
dcant_obs_budget_all %>%
group_by(inv_depth) %>%
group_split() %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(estimate, dcant_pos, fill = basin_AIP)) +
scale_fill_brewer(palette = "Dark2") +
geom_col() +
facet_grid(MLR_basins ~ period) +
labs(title = paste("inventory depth:",unique(.x$inv_depth)))
)[[1]]
[[2]]
[[3]]
[[4]]
[[5]]
6 Predictor analysis
lm_best_predictor_counts_all <-
full_join(lm_best_predictor_counts_all,
params_local_all)Joining, by = "Version_ID"lm_best_predictor_counts_all <- lm_best_predictor_counts_all %>%
mutate(n_predictors_total = rowSums(across(aou:temp), na.rm = TRUE)/10)
lm_best_predictor_counts_all %>%
ggplot(aes(x = MLR_basins, y = n_predictors_total)) +
# ggdist::stat_halfeye(
# adjust = .5,
# width = .6,
# .width = 0,
# justification = -.2,
# point_colour = NA
# ) +
geom_boxplot(width = 0.5,
outlier.shape = NA) +
gghalves::geom_half_point(
side = "l",
range_scale = .4,
alpha = .5,
aes(col = gamma_slab)
) +
scale_color_viridis_d() +
facet_grid(basin ~ data_source)
lm_best_predictor_counts_all %>%
pivot_longer(aou:temp,
names_to = "predictor",
values_to = "count") %>%
group_split(predictor) %>%
# head(1) %>%
map(
~ ggplot(data = .x,
aes(MLR_basins, count, color = gamma_slab)) +
geom_jitter(alpha = 0.5) +
scale_color_viridis_d() +
labs(title = paste0("predictor:", unique(.x$predictor))) +
coord_cartesian(ylim = c(0, 10)) +
facet_grid(basin ~ data_source)
)[[1]]Warning: Removed 2 rows containing missing values (geom_point).
[[2]]Warning: Removed 44 rows containing missing values (geom_point).
[[3]]Warning: Removed 1 rows containing missing values (geom_point).
[[4]]Warning: Removed 9 rows containing missing values (geom_point).
[[5]]
[[6]]Warning: Removed 3 rows containing missing values (geom_point).
[[7]]Warning: Removed 3 rows containing missing values (geom_point).
lm_best_dcant_all <-
full_join(lm_best_dcant_all,
params_local_all)Joining, by = "Version_ID"lm_best_dcant_all %>%
count(basin, data_source, gamma_slab, MLR_basins, period) %>%
ggplot(aes(MLR_basins, n)) +
geom_jitter(height = 0, alpha = 0.3) +
facet_grid(basin ~ data_source)
7 Drift and bias
dcant_budget_global_all_dissic %>%
filter(estimate == "dcant") %>%
ggplot(aes(inv_depth, value, col = !!sym(config))) +
geom_hline(yintercept = 0) +
scale_color_brewer(palette = "Dark2") +
geom_point() +
geom_path() +
labs(y = "DIC change (PgC)") +
facet_grid(data_source ~ period, scales = "free_y")
| Version | Author | Date |
|---|---|---|
| 1aabfea | jens-daniel-mueller | 2022-07-12 |
dcant_budget_global_bias_all_decomposition <-
dcant_budget_global_bias_all_decomposition %>%
filter(estimate == "dcant") %>%
select(inv_depth, dcant_bias, contribution, !!sym(config), period) %>%
pivot_wider(names_from = contribution,
values_from = dcant_bias)
dcant_budget_global_bias_all_decomposition <-
full_join(
dcant_budget_global_bias_all_decomposition,
dcant_budget_global_bias_all_depth %>%
select(inv_depth, !!sym(config), period, mod_truth)
)Joining, by = c("inv_depth", "MLR_basins", "period")dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(`dcant offset`, `delta C* - mod_truth`, col = !!sym(config))) +
geom_vline(xintercept = 0, col = "grey50") +
geom_hline(yintercept = 0, col = "grey50") +
geom_abline(intercept = 0, slope = 1) +
geom_point() +
coord_fixed() +
scale_color_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(`dcant offset`, `C* prediction error`, col = !!sym(config))) +
geom_vline(xintercept = 0, col = "grey50") +
geom_hline(yintercept = 0, col = "grey50") +
geom_abline(intercept = 0, slope = 1) +
geom_point() +
coord_fixed() +
scale_color_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(
`dcant offset`,
`C* prediction error` + `delta C* - mod_truth`,
col = !!sym(config)
)) +
geom_vline(xintercept = 0, col = "grey50") +
geom_hline(yintercept = 0, col = "grey50") +
geom_abline(intercept = 0, slope = 1) +
geom_point() +
coord_fixed() +
scale_color_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(`dcant offset`, `C* drift`, col = !!sym(config))) +
geom_vline(xintercept = 0, col = "grey50") +
geom_hline(yintercept = 0, col = "grey50") +
geom_abline(intercept = 0, slope = 1) +
geom_point() +
coord_fixed() +
scale_color_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(
`dcant offset` - `C* drift`,
`C* prediction error`,
col = !!sym(config)
)) +
geom_vline(xintercept = 0, col = "grey50") +
geom_hline(yintercept = 0, col = "grey50") +
geom_abline(intercept = 0, slope = 1) +
geom_point() +
coord_fixed() +
scale_color_brewer(palette = "Dark2") +
facet_grid(inv_depth ~ period)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(
x = period,
fill = !!sym(config),
col = !!sym(config)
)) +
geom_hline(yintercept = 0) +
geom_point(
aes(y = `dcant offset`, shape = "dcant offset"),
position = position_nudge(x = -0.05),
alpha = 0.5
) +
geom_point(
aes(y = `dcant offset` - `C* drift`, shape = "dcant offset - C* drift"),
position = position_nudge(x = 0.05),
alpha = 0.5
) +
scale_color_brewer(palette = "Dark2") +
scale_fill_brewer(palette = "Dark2") +
scale_shape_manual(values = c(21,23)) +
facet_grid(inv_depth ~ .)
dcant_budget_global_bias_all_decomposition <-
dcant_budget_global_bias_all_decomposition %>%
mutate(
`dcant offset rel` = 100 * `dcant offset` / mod_truth,
`dcant offset rel corr` = 100 * (`dcant offset` - `C* drift`) / mod_truth,
`C* prediction error rel` = 100 * (`C* prediction error`) / mod_truth
)
dcant_budget_global_bias_all_decomposition %>%
ggplot(aes(
x = period,
fill = !!sym(config),
col = !!sym(config)
)) +
geom_hline(yintercept = 0) +
geom_point(
aes(y = `dcant offset rel`, shape = "dcant offset"),
position = position_nudge(x = -0.05),
alpha = 0.5
) +
geom_point(
aes(y = `dcant offset rel corr`, shape = "dcant offset - C* drift"),
position = position_nudge(x = 0.05),
alpha = 0.5
) +
scale_color_brewer(palette = "Dark2") +
scale_fill_brewer(palette = "Dark2") +
scale_shape_manual(values = c(21,23)) +
facet_grid(inv_depth ~ .)
dcant_budget_global_bias_all_decomposition <-
dcant_budget_global_bias_all_decomposition %>%
pivot_longer(-c(inv_depth:period),
names_to = "estimate",
values_to = "value")
dcant_budget_global_bias_all_decomposition %>%
group_by(inv_depth, estimate) %>%
summarise(mean = mean(value),
sd = sd(value)) %>%
ungroup() %>%
kable() %>%
kable_styling() %>%
scroll_box(height = "300px")`summarise()` has grouped output by 'inv_depth'. You can override using the
`.groups` argument.| inv_depth | estimate | mean | sd |
|---|---|---|---|
| 100 | C* drift | 0.2033333 | 0.0740032 |
| 100 | C* prediction error | -0.2352222 | 0.3484668 |
| 100 | C* prediction error rel | -4.3721283 | 8.3314455 |
| 100 | dcant offset | 0.2476667 | 0.1617624 |
| 100 | dcant offset rel | 5.5453674 | 4.3154809 |
| 100 | dcant offset rel corr | 1.2533006 | 4.0292410 |
| 100 | delta C* - mod_truth | -0.3946667 | 0.2164184 |
| 100 | mod_truth | 4.7563333 | 1.7425592 |
| 500 | C* drift | 1.3446667 | 0.4893907 |
| 500 | C* prediction error | -1.2904444 | 0.9639755 |
| 500 | C* prediction error rel | -7.3740811 | 5.0061910 |
| 500 | dcant offset | 0.3868333 | 0.7351422 |
| 500 | dcant offset rel | 2.5676265 | 5.0877492 |
| 500 | dcant offset rel corr | -5.3987391 | 4.6378088 |
| 500 | delta C* - mod_truth | 0.3773333 | 0.1374833 |
| 500 | mod_truth | 16.9600000 | 6.2242462 |
| 1000 | C* drift | 3.1486667 | 1.1458415 |
| 1000 | C* prediction error | -2.9601667 | 1.6056927 |
| 1000 | C* prediction error rel | -12.9150391 | 5.2125368 |
| 1000 | dcant offset | 0.4265556 | 1.0771682 |
| 1000 | dcant offset rel | 2.0396603 | 5.2035749 |
| 1000 | dcant offset rel corr | -11.8694094 | 4.8162617 |
| 1000 | delta C* - mod_truth | 2.0866667 | 0.7598902 |
| 1000 | mod_truth | 22.7516667 | 8.3557301 |
| 3000 | C* drift | 3.9900000 | 1.4521475 |
| 3000 | C* prediction error | -2.1717778 | 1.4739848 |
| 3000 | C* prediction error rel | -8.4771507 | 5.2282204 |
| 3000 | dcant offset | 1.7465000 | 1.4376203 |
| 3000 | dcant offset rel | 6.9019717 | 5.6555168 |
| 3000 | dcant offset rel corr | -8.7421729 | 5.6358054 |
| 3000 | delta C* - mod_truth | 2.6026667 | 0.9469936 |
| 3000 | mod_truth | 25.6453333 | 9.4254881 |
| 10000 | C* drift | 3.3760000 | 1.2289476 |
| 10000 | C* prediction error | -1.0266667 | 1.8113310 |
| 10000 | C* prediction error rel | -3.9208671 | 7.2879706 |
| 10000 | dcant offset | 2.0433333 | 2.0152288 |
| 10000 | dcant offset rel | 7.9545824 | 7.9019170 |
| 10000 | dcant offset rel corr | -5.0842936 | 7.8709932 |
| 10000 | delta C* - mod_truth | 1.7546667 | 0.6384472 |
| 10000 | mod_truth | 26.0420000 | 9.5725748 |
dcant_budget_global_bias_all_decomposition %>%
group_by(inv_depth, estimate, period) %>%
summarise(mean = mean(value),
sd = sd(value)) %>%
ungroup() %>%
kable() %>%
kable_styling() %>%
scroll_box(height = "300px")`summarise()` has grouped output by 'inv_depth', 'estimate'. You can override
using the `.groups` argument.| inv_depth | estimate | period | mean | sd |
|---|---|---|---|---|
| 100 | C* drift | 1994 - 2004 | 0.1550000 | 0.0000000 |
| 100 | C* drift | 1994 - 2014 | 0.3050000 | 0.0000000 |
| 100 | C* drift | 2004 - 2014 | 0.1500000 | 0.0000000 |
| 100 | C* prediction error | 1994 - 2004 | 0.1296667 | 0.1905263 |
| 100 | C* prediction error | 1994 - 2014 | -0.3993333 | 0.2639694 |
| 100 | C* prediction error | 2004 - 2014 | -0.4360000 | 0.2577076 |
| 100 | C* prediction error rel | 1994 - 2004 | 3.9067992 | 5.7404727 |
| 100 | C* prediction error rel | 1994 - 2014 | -5.5976077 | 3.7001604 |
| 100 | C* prediction error rel | 2004 - 2014 | -11.4255765 | 6.7533435 |
| 100 | dcant offset | 1994 - 2004 | 0.3528333 | 0.0582354 |
| 100 | dcant offset | 1994 - 2014 | 0.3461667 | 0.0637916 |
| 100 | dcant offset | 2004 - 2014 | 0.0440000 | 0.0825615 |
| 100 | dcant offset rel | 1994 - 2004 | 10.6307121 | 1.7546081 |
| 100 | dcant offset rel | 1994 - 2014 | 4.8523502 | 0.8941910 |
| 100 | dcant offset rel | 2004 - 2014 | 1.1530398 | 2.1635611 |
| 100 | dcant offset rel corr | 1994 - 2004 | 5.9606307 | 1.7546081 |
| 100 | dcant offset rel corr | 1994 - 2014 | 0.5770489 | 0.8941910 |
| 100 | dcant offset rel corr | 2004 - 2014 | -2.7777778 | 2.1635611 |
| 100 | delta C* - mod_truth | 1994 - 2004 | -0.4900000 | 0.0000000 |
| 100 | delta C* - mod_truth | 1994 - 2014 | -0.5910000 | 0.0000000 |
| 100 | delta C* - mod_truth | 2004 - 2014 | -0.1030000 | 0.0000000 |
| 100 | mod_truth | 1994 - 2004 | 3.3190000 | 0.0000000 |
| 100 | mod_truth | 1994 - 2014 | 7.1340000 | 0.0000000 |
| 100 | mod_truth | 2004 - 2014 | 3.8160000 | 0.0000000 |
| 500 | C* drift | 1994 - 2004 | 1.0250000 | 0.0000000 |
| 500 | C* drift | 1994 - 2014 | 2.0170000 | 0.0000000 |
| 500 | C* drift | 2004 - 2014 | 0.9920000 | 0.0000000 |
| 500 | C* prediction error | 1994 - 2004 | -0.4811667 | 0.6162696 |
| 500 | C* prediction error | 1994 - 2014 | -1.9961667 | 1.0105382 |
| 500 | C* prediction error | 2004 - 2014 | -1.3940000 | 0.6016913 |
| 500 | C* prediction error rel | 1994 - 2004 | -4.0967788 | 5.2470801 |
| 500 | C* prediction error rel | 1994 - 2014 | -7.8465671 | 3.9722412 |
| 500 | C* prediction error rel | 2004 - 2014 | -10.1788974 | 4.3935106 |
| 500 | dcant offset | 1994 - 2004 | 0.8605000 | 0.4978131 |
| 500 | dcant offset | 1994 - 2014 | 0.5381667 | 0.7891011 |
| 500 | dcant offset | 2004 - 2014 | -0.2381667 | 0.4489020 |
| 500 | dcant offset rel | 1994 - 2004 | 7.3265219 | 4.2385110 |
| 500 | dcant offset rel | 1994 - 2014 | 2.1154350 | 3.1018126 |
| 500 | dcant offset rel | 2004 - 2014 | -1.7390775 | 3.2778529 |
| 500 | dcant offset rel corr | 1994 - 2004 | -1.4005960 | 4.2385110 |
| 500 | dcant offset rel corr | 1994 - 2014 | -5.8130241 | 3.1018126 |
| 500 | dcant offset rel corr | 2004 - 2014 | -8.9825971 | 3.2778529 |
| 500 | delta C* - mod_truth | 1994 - 2004 | 0.2920000 | 0.0000000 |
| 500 | delta C* - mod_truth | 1994 - 2014 | 0.5660000 | 0.0000000 |
| 500 | delta C* - mod_truth | 2004 - 2014 | 0.2740000 | 0.0000000 |
| 500 | mod_truth | 1994 - 2004 | 11.7450000 | 0.0000000 |
| 500 | mod_truth | 1994 - 2014 | 25.4400000 | 0.0000000 |
| 500 | mod_truth | 2004 - 2014 | 13.6950000 | 0.0000000 |
| 1000 | C* drift | 1994 - 2004 | 2.3950000 | 0.0000000 |
| 1000 | C* drift | 1994 - 2014 | 4.7230000 | 0.0000000 |
| 1000 | C* drift | 2004 - 2014 | 2.3280000 | 0.0000000 |
| 1000 | C* prediction error | 1994 - 2004 | -1.8386667 | 1.2016245 |
| 1000 | C* prediction error | 1994 - 2014 | -4.4781667 | 1.5994966 |
| 1000 | C* prediction error | 2004 - 2014 | -2.5636667 | 0.5482681 |
| 1000 | C* prediction error rel | 1994 - 2004 | -11.7112527 | 7.6536593 |
| 1000 | C* prediction error rel | 1994 - 2014 | -13.1220637 | 4.6868948 |
| 1000 | C* prediction error rel | 2004 - 2014 | -13.9118009 | 2.9751903 |
| 1000 | dcant offset | 1994 - 2004 | 0.7685000 | 1.1389526 |
| 1000 | dcant offset | 1994 - 2014 | 0.6208333 | 1.4032966 |
| 1000 | dcant offset | 2004 - 2014 | -0.1096667 | 0.3845666 |
| 1000 | dcant offset rel | 1994 - 2004 | 4.8949045 | 7.2544754 |
| 1000 | dcant offset rel | 1994 - 2014 | 1.8191852 | 4.1119835 |
| 1000 | dcant offset rel | 2004 - 2014 | -0.5951089 | 2.0868602 |
| 1000 | dcant offset rel corr | 1994 - 2004 | -10.3598726 | 7.2544754 |
| 1000 | dcant offset rel corr | 1994 - 2014 | -12.0202967 | 4.1119835 |
| 1000 | dcant offset rel corr | 2004 - 2014 | -13.2280588 | 2.0868602 |
| 1000 | delta C* - mod_truth | 1994 - 2004 | 1.5570000 | 0.0000000 |
| 1000 | delta C* - mod_truth | 1994 - 2014 | 3.1310000 | 0.0000000 |
| 1000 | delta C* - mod_truth | 2004 - 2014 | 1.5720000 | 0.0000000 |
| 1000 | mod_truth | 1994 - 2004 | 15.7000000 | 0.0000000 |
| 1000 | mod_truth | 1994 - 2014 | 34.1270000 | 0.0000000 |
| 1000 | mod_truth | 2004 - 2014 | 18.4280000 | 0.0000000 |
| 3000 | C* drift | 1994 - 2004 | 3.0410000 | 0.0000000 |
| 3000 | C* drift | 1994 - 2014 | 5.9850000 | 0.0000000 |
| 3000 | C* drift | 2004 - 2014 | 2.9440000 | 0.0000000 |
| 3000 | C* prediction error | 1994 - 2004 | -1.6391667 | 1.3440809 |
| 3000 | C* prediction error | 1994 - 2014 | -3.3031667 | 1.6135626 |
| 3000 | C* prediction error | 2004 - 2014 | -1.5730000 | 0.8186015 |
| 3000 | C* prediction error rel | 1994 - 2004 | -9.2923280 | 7.6195060 |
| 3000 | C* prediction error rel | 1994 - 2014 | -8.5867908 | 4.1945580 |
| 3000 | C* prediction error rel | 2004 - 2014 | -7.5523334 | 3.9302933 |
| 3000 | dcant offset | 1994 - 2004 | 1.3906667 | 1.4799236 |
| 3000 | dcant offset | 1994 - 2014 | 2.5693333 | 1.6943235 |
| 3000 | dcant offset | 2004 - 2014 | 1.2795000 | 0.8601962 |
| 3000 | dcant offset rel | 1994 - 2004 | 7.8835979 | 8.3895896 |
| 3000 | dcant offset rel | 1994 - 2014 | 6.6791446 | 4.4045013 |
| 3000 | dcant offset rel | 2004 - 2014 | 6.1431727 | 4.1299990 |
| 3000 | dcant offset rel corr | 1994 - 2004 | -9.3556311 | 8.3895896 |
| 3000 | dcant offset rel corr | 1994 - 2014 | -8.8792416 | 4.4045013 |
| 3000 | dcant offset rel corr | 2004 - 2014 | -7.9916459 | 4.1299990 |
| 3000 | delta C* - mod_truth | 1994 - 2004 | 1.9330000 | 0.0000000 |
| 3000 | delta C* - mod_truth | 1994 - 2014 | 3.9040000 | 0.0000000 |
| 3000 | delta C* - mod_truth | 2004 - 2014 | 1.9710000 | 0.0000000 |
| 3000 | mod_truth | 1994 - 2004 | 17.6400000 | 0.0000000 |
| 3000 | mod_truth | 1994 - 2014 | 38.4680000 | 0.0000000 |
| 3000 | mod_truth | 2004 - 2014 | 20.8280000 | 0.0000000 |
| 10000 | C* drift | 1994 - 2004 | 2.5830000 | 0.0000000 |
| 10000 | C* drift | 1994 - 2014 | 5.0640000 | 0.0000000 |
| 10000 | C* drift | 2004 - 2014 | 2.4810000 | 0.0000000 |
| 10000 | C* prediction error | 1994 - 2004 | -0.7856667 | 1.9608413 |
| 10000 | C* prediction error | 1994 - 2014 | -1.6015000 | 2.3888246 |
| 10000 | C* prediction error | 2004 - 2014 | -0.6928333 | 1.0018957 |
| 10000 | C* prediction error rel | 1994 - 2004 | -4.3887089 | 10.9531969 |
| 10000 | C* prediction error rel | 1994 - 2014 | -4.0997875 | 6.1153128 |
| 10000 | C* prediction error rel | 2004 - 2014 | -3.2741049 | 4.7346330 |
| 10000 | dcant offset | 1994 - 2004 | 1.6140000 | 2.1364089 |
| 10000 | dcant offset | 1994 - 2014 | 2.9981667 | 2.5419911 |
| 10000 | dcant offset | 2004 - 2014 | 1.5178333 | 1.0655127 |
| 10000 | dcant offset rel | 1994 - 2004 | 9.0157524 | 11.9339116 |
| 10000 | dcant offset rel | 1994 - 2014 | 7.6752084 | 6.5074140 |
| 10000 | dcant offset rel | 2004 - 2014 | 7.1727864 | 5.0352664 |
| 10000 | dcant offset rel corr | 1994 - 2004 | -5.4128030 | 11.9339116 |
| 10000 | dcant offset rel corr | 1994 - 2014 | -5.2884656 | 6.5074140 |
| 10000 | dcant offset rel corr | 2004 - 2014 | -4.5516122 | 5.0352664 |
| 10000 | delta C* - mod_truth | 1994 - 2004 | 1.3030000 | 0.0000000 |
| 10000 | delta C* - mod_truth | 1994 - 2014 | 2.6320000 | 0.0000000 |
| 10000 | delta C* - mod_truth | 2004 - 2014 | 1.3290000 | 0.0000000 |
| 10000 | mod_truth | 1994 - 2004 | 17.9020000 | 0.0000000 |
| 10000 | mod_truth | 1994 - 2014 | 39.0630000 | 0.0000000 |
| 10000 | mod_truth | 2004 - 2014 | 21.1610000 | 0.0000000 |
sessionInfo()R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3
Matrix products: default
BLAS: /usr/local/R-4.1.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.1.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.3.4 geomtextpath_0.1.0 colorspace_2.0-2 marelac_2.1.10
[5] shape_1.4.6 ggforce_0.3.3 metR_0.11.0 scico_1.3.0
[9] patchwork_1.1.1 collapse_1.7.0 forcats_0.5.1 stringr_1.4.0
[13] dplyr_1.0.7 purrr_0.3.4 readr_2.1.1 tidyr_1.1.4
[17] tibble_3.1.6 ggplot2_3.3.5 tidyverse_1.3.1 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] fs_1.5.2 gghalves_0.1.1 bit64_4.0.5 lubridate_1.8.0
[5] gsw_1.0-6 RColorBrewer_1.1-2 webshot_0.5.2 httr_1.4.2
[9] rprojroot_2.0.2 tools_4.1.2 backports_1.4.1 bslib_0.3.1
[13] utf8_1.2.2 R6_2.5.1 DBI_1.1.2 withr_2.4.3
[17] tidyselect_1.1.1 processx_3.5.2 bit_4.0.4 compiler_4.1.2
[21] git2r_0.29.0 textshaping_0.3.6 cli_3.1.1 rvest_1.0.2
[25] xml2_1.3.3 labeling_0.4.2 sass_0.4.0 scales_1.1.1
[29] checkmate_2.0.0 SolveSAPHE_2.1.0 callr_3.7.0 systemfonts_1.0.3
[33] digest_0.6.29 svglite_2.0.0 rmarkdown_2.11 oce_1.5-0
[37] pkgconfig_2.0.3 htmltools_0.5.2 highr_0.9 dbplyr_2.1.1
[41] fastmap_1.1.0 rlang_1.0.2 readxl_1.3.1 rstudioapi_0.13
[45] jquerylib_0.1.4 generics_0.1.1 farver_2.1.0 jsonlite_1.7.3
[49] vroom_1.5.7 magrittr_2.0.1 Rcpp_1.0.8 munsell_0.5.0
[53] fansi_1.0.2 lifecycle_1.0.1 stringi_1.7.6 whisker_0.4
[57] yaml_2.2.1 MASS_7.3-55 grid_4.1.2 parallel_4.1.2
[61] promises_1.2.0.1 crayon_1.4.2 haven_2.4.3 hms_1.1.1
[65] seacarb_3.3.0 knitr_1.37 ps_1.6.0 pillar_1.6.4
[69] reprex_2.0.1 glue_1.6.0 evaluate_0.14 getPass_0.2-2
[73] data.table_1.14.2 modelr_0.1.8 vctrs_0.3.8 tzdb_0.2.0
[77] tweenr_1.0.2 httpuv_1.6.5 cellranger_1.1.0 gtable_0.3.0
[81] polyclip_1.10-0 assertthat_0.2.1 xfun_0.29 broom_0.7.11
[85] later_1.3.0 viridisLite_0.4.0 ellipsis_0.3.2 here_1.0.1