Last updated: 2020-08-11

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Knit directory: drift-workflow/analysis/

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File Version Author Date Message
Rmd 75541ad Jason Willwerscheid 2020-08-11 workflowr::wflow_publish(“analysis/index.Rmd”)
html 6ce8b55 Jason Willwerscheid 2020-08-09 Build site.
Rmd eada53c Jason Willwerscheid 2020-08-09 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd 14811ca Jason Willwerscheid 2020-08-07 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd fcf1395 Jason Willwerscheid 2020-08-07 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd f5b47cf Jason Willwerscheid 2020-08-01 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd 69b7c40 Jason Willwerscheid 2020-07-24 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd 936c55b Jason Willwerscheid 2020-07-23 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd f7400ac Jason Willwerscheid 2020-07-23 workflowr::wflow_publish(“analysis/index.Rmd”)
html d73336f Jason Willwerscheid 2020-07-22 Build site.
Rmd 4b27863 Jason Willwerscheid 2020-07-22 workflowr::wflow_publish(“analysis/index.Rmd”)
html a937d09 Joseph Marcus 2020-07-14 Build site.
Rmd bdedc57 Joseph Marcus 2020-07-14 wflow_publish(“index.Rmd”)
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Rmd ec2f0f1 Joseph Marcus 2020-07-14 wflow_publish(“index.Rmd”)
html 2945e06 Jason Willwerscheid 2020-07-06 Build site.
Rmd 0ec4958 Jason Willwerscheid 2020-07-06 attempt to resolve merge conflict
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Rmd 4bf25c6 Joseph Marcus 2020-06-29 updated index
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Rmd ddbdc2c Jason Willwerscheid 2020-06-25 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd d04a2e7 Jason Willwerscheid 2020-06-24 workflowr::wflow_publish(“analysis/index.Rmd”)
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Rmd 865cef4 Joseph Marcus 2020-05-18 added fixed shared factor
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Rmd a864e2c Joseph Marcus 2020-05-13 wflow_publish(“index.Rmd”)
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Rmd 708d54d Joseph Marcus 2020-05-13 wflow_publish(“analysis/index.Rmd”)
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Rmd add8033 Joseph Marcus 2020-05-12 wflow_publish(“index.Rmd”)
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Rmd ab45cd4 Joseph Marcus 2020-05-09 wflow_publish(“index.Rmd”)
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Rmd ceffc2b Joseph Marcus 2020-05-09 wflow_publish(“index.Rmd”)
Rmd eb53ef2 Joseph Marcus 2020-05-05 simplified plotting code and updating analysis with new plots
html 2dd9256 Jason Willwerscheid 2020-01-18 Build site.
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html 0bb6732 jhmarcus 2019-12-21 Build site.
Rmd 7b7b6d4 jhmarcus 2019-12-19 added init drift alpha application to simulation
html 7b7b6d4 jhmarcus 2019-12-19 added init drift alpha application to simulation
Rmd e3936bc jhmarcus 2019-12-01 pushing 2 pop analysis
html e3936bc jhmarcus 2019-12-01 pushing 2 pop analysis
Rmd 221956b jhmarcus 2019-05-23 added exploration of using bernoulli prior for enbm
html 221956b jhmarcus 2019-05-23 added exploration of using bernoulli prior for enbm
Rmd c03180c jhmarcus 2019-05-22 added 2 pop tree
html c03180c jhmarcus 2019-05-22 added 2 pop tree
Rmd 2ded9d3 jhmarcus 2019-05-20 added bimodal prior sim
html 2ded9d3 jhmarcus 2019-05-20 added bimodal prior sim
Rmd 44a10f7 jhmarcus 2019-05-05 added bimodal ash exploration
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html 89ee553 jhmarcus 2019-05-03 added github link
Rmd 912c5ff jhmarcus 2019-05-03 added simpler tree sim
html 912c5ff jhmarcus 2019-05-03 added simpler tree sim
Rmd e32adcc jhmarcus 2019-04-19 init badmixture sim
html e32adcc jhmarcus 2019-04-19 init badmixture sim
Rmd 0a3374d jhmarcus 2019-04-15 added simple sim
html 0a3374d jhmarcus 2019-04-15 added simple sim
html 71e0580 Peter Carbonetto 2019-03-14 Re-built home page with correct top-right link.
html 820a40e Peter Carbonetto 2019-03-14 Added link to hoa_global_alt analysis in home page.
Rmd 4c8921b Peter Carbonetto 2019-03-14 wflow_publish(“index.Rmd”)
html 9d521a9 jhmarcus 2019-03-05 Build site.
Rmd d2573ea jhmarcus 2019-03-05 updated idx
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html 9a69c08 jhmarcus 2019-03-04 updated data hoa
Rmd a1580ed jhmarcus 2019-03-04 added data exploration
html a1580ed jhmarcus 2019-03-04 added data exploration
html c203e00 jhmarcus 2019-03-03 Build site.
html 90a0a02 jhmarcus 2019-02-28 updated to autosomes and added manhatten plot
html 38a461d jhmarcus 2019-02-24 built all
html 7644d40 jhmarcus 2019-02-24 updated index
Rmd 38b57c5 jhmarcus 2019-02-24 simplified greedy flash global analysis
html 403bc6b jhmarcus 2019-02-15 added hide code blocks
html b4749ac jhmarcus 2019-02-15 fixed some typos
html 7a2b6c7 jhmarcus 2019-02-15 added backfit
Rmd f5ef1af jhmarcus 2019-02-15 added workflows for human origins datasets
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html 31a16c6 jhmarcus 2019-02-14 added hists of factors
html 9538510 jhmarcus 2019-02-13 switched to struct style plot
html 63c2b75 jhmarcus 2019-02-13 added softimpute
html 7b6ecbc jhmarcus 2019-02-12 made fig size bigger
Rmd 5c0f91a jhmarcus 2019-02-12 init flash proof of principle
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Rmd 46105ee jhmarcus 2019-02-11 Start workflowr project.

Authors: Joe Marcus and Jason Willwerscheid
Advisors: John Novembre, Peter Carbonetto, and Matthew Stephens

Current

Data Preparation

These vignettes describe data preparation steps:

Deprecated

Before 2019-12-01:

Exploration

These vignettes describe exploratory ideas:

Results

These vignettes describe results on simulated / empirical data: