Last updated: 2020-08-07
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Knit directory: drift-workflow/analysis/
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File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | fcf1395 | Jason Willwerscheid | 2020-08-07 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | 7a475c1 | Jason Willwerscheid | 2020-08-01 | Build site. |
Rmd | f5b47cf | Jason Willwerscheid | 2020-08-01 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | ffebb88 | Jason Willwerscheid | 2020-08-01 | Build site. |
Rmd | dc49cb6 | Jason Willwerscheid | 2020-08-01 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | 7c7d51c | Jason Willwerscheid | 2020-07-31 | Build site. |
Rmd | 782585d | Jason Willwerscheid | 2020-07-31 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | c5e86a1 | Jason Willwerscheid | 2020-07-24 | Build site. |
Rmd | 69b7c40 | Jason Willwerscheid | 2020-07-24 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | a76dae7 | Jason Willwerscheid | 2020-07-23 | Build site. |
Rmd | 936c55b | Jason Willwerscheid | 2020-07-23 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | a2dc03d | Jason Willwerscheid | 2020-07-23 | Build site. |
Rmd | f7400ac | Jason Willwerscheid | 2020-07-23 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | d73336f | Jason Willwerscheid | 2020-07-22 | Build site. |
Rmd | 4b27863 | Jason Willwerscheid | 2020-07-22 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | a937d09 | Joseph Marcus | 2020-07-14 | Build site. |
Rmd | bdedc57 | Joseph Marcus | 2020-07-14 | wflow_publish(“index.Rmd”) |
html | 5468dcb | Joseph Marcus | 2020-07-14 | Build site. |
Rmd | ec2f0f1 | Joseph Marcus | 2020-07-14 | wflow_publish(“index.Rmd”) |
html | 2945e06 | Jason Willwerscheid | 2020-07-06 | Build site. |
Rmd | 0ec4958 | Jason Willwerscheid | 2020-07-06 | attempt to resolve merge conflict |
html | a0e9441 | Jason Willwerscheid | 2020-07-06 | Build site. |
Rmd | b07f893 | Jason Willwerscheid | 2020-07-06 | wflow_publish(“analysis/index.Rmd”) |
Rmd | 4bf25c6 | Joseph Marcus | 2020-06-29 | updated index |
html | 4bf25c6 | Joseph Marcus | 2020-06-29 | updated index |
html | 08e61ef | Joseph Marcus | 2020-06-29 | Build site. |
Rmd | eaec2d0 | Joseph Marcus | 2020-06-29 | workflowr::wflow_publish(“index.Rmd”) |
html | 054b0ad | Jason Willwerscheid | 2020-06-25 | Build site. |
Rmd | ddbdc2c | Jason Willwerscheid | 2020-06-25 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | 43a0eeb | Jason Willwerscheid | 2020-06-24 | Build site. |
Rmd | d04a2e7 | Jason Willwerscheid | 2020-06-24 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | e5dc83d | Jason Willwerscheid | 2020-06-12 | Build site. |
Rmd | 7503c8f | Jason Willwerscheid | 2020-06-12 | wflow_publish(“analysis/index.Rmd”) |
html | 7eec2a9 | Jason Willwerscheid | 2020-06-06 | Build site. |
Rmd | f7eb26b | Jason Willwerscheid | 2020-06-06 | wflow_publish(“analysis/index.Rmd”) |
html | cb9009e | Joseph Marcus | 2020-05-21 | Build site. |
Rmd | 3549c6d | Joseph Marcus | 2020-05-21 | wflow_publish(“index.Rmd”) |
html | c6a96ae | Joseph Marcus | 2020-05-18 | Build site. |
html | 8660723 | Joseph Marcus | 2020-05-18 | Build site. |
html | d8045c5 | Joseph Marcus | 2020-05-18 | Build site. |
Rmd | 865cef4 | Joseph Marcus | 2020-05-18 | added fixed shared factor |
html | 865cef4 | Joseph Marcus | 2020-05-18 | added fixed shared factor |
html | 71684e5 | Joseph Marcus | 2020-05-13 | Build site. |
Rmd | a864e2c | Joseph Marcus | 2020-05-13 | wflow_publish(“index.Rmd”) |
html | 3421141 | Joseph Marcus | 2020-05-13 | Build site. |
Rmd | 708d54d | Joseph Marcus | 2020-05-13 | wflow_publish(“analysis/index.Rmd”) |
html | 2845b2c | Joseph Marcus | 2020-05-12 | Build site. |
Rmd | add8033 | Joseph Marcus | 2020-05-12 | wflow_publish(“index.Rmd”) |
html | 6947c09 | Joseph Marcus | 2020-05-09 | added drfit analysis |
html | d8ba76d | Joseph Marcus | 2020-05-09 | Build site. |
Rmd | ab45cd4 | Joseph Marcus | 2020-05-09 | wflow_publish(“index.Rmd”) |
html | 1cf93f3 | Joseph Marcus | 2020-05-09 | Build site. |
Rmd | ceffc2b | Joseph Marcus | 2020-05-09 | wflow_publish(“index.Rmd”) |
Rmd | eb53ef2 | Joseph Marcus | 2020-05-05 | simplified plotting code and updating analysis with new plots |
html | 2dd9256 | Jason Willwerscheid | 2020-01-18 | Build site. |
Rmd | aec23d2 | Jason Willwerscheid | 2020-01-18 | wflow_publish(“analysis/index.Rmd”) |
html | a9a33bc | Jason Willwerscheid | 2020-01-16 | Build site. |
Rmd | b0090a0 | Jason Willwerscheid | 2020-01-16 | wflow_publish(“analysis/index.Rmd”) |
html | 92ea5bb | Jason Willwerscheid | 2020-01-16 | Build site. |
Rmd | 7128cb0 | Jason Willwerscheid | 2020-01-16 | wflow_publish(“analysis/index.Rmd”) |
html | 3c8a921 | Jason Willwerscheid | 2020-01-15 | Build site. |
Rmd | fc51e9b | Jason Willwerscheid | 2020-01-15 | wflow_publish(“analysis/index.Rmd”) |
html | 7b056d2 | Jason Willwerscheid | 2020-01-14 | Build site. |
Rmd | 3b38211 | Jason Willwerscheid | 2020-01-14 | wflow_publish(“analysis/index.Rmd”) |
html | 63c9d16 | Jason Willwerscheid | 2020-01-10 | Build site. |
Rmd | 885767b | Jason Willwerscheid | 2020-01-10 | wflow_publish(“analysis/index.Rmd”) |
html | ad7400b | Jason Willwerscheid | 2020-01-10 | Build site. |
Rmd | 6d7cf9e | Jason Willwerscheid | 2020-01-10 | workflowr::wflow_publish(“analysis/index.Rmd”) |
html | 0bb6732 | jhmarcus | 2019-12-21 | Build site. |
Rmd | 7b7b6d4 | jhmarcus | 2019-12-19 | added init drift alpha application to simulation |
html | 7b7b6d4 | jhmarcus | 2019-12-19 | added init drift alpha application to simulation |
Rmd | e3936bc | jhmarcus | 2019-12-01 | pushing 2 pop analysis |
html | e3936bc | jhmarcus | 2019-12-01 | pushing 2 pop analysis |
Rmd | 221956b | jhmarcus | 2019-05-23 | added exploration of using bernoulli prior for enbm |
html | 221956b | jhmarcus | 2019-05-23 | added exploration of using bernoulli prior for enbm |
Rmd | c03180c | jhmarcus | 2019-05-22 | added 2 pop tree |
html | c03180c | jhmarcus | 2019-05-22 | added 2 pop tree |
Rmd | 2ded9d3 | jhmarcus | 2019-05-20 | added bimodal prior sim |
html | 2ded9d3 | jhmarcus | 2019-05-20 | added bimodal prior sim |
Rmd | 44a10f7 | jhmarcus | 2019-05-05 | added bimodal ash exploration |
html | 44a10f7 | jhmarcus | 2019-05-05 | added bimodal ash exploration |
html | 89ee553 | jhmarcus | 2019-05-03 | added github link |
Rmd | 912c5ff | jhmarcus | 2019-05-03 | added simpler tree sim |
html | 912c5ff | jhmarcus | 2019-05-03 | added simpler tree sim |
Rmd | e32adcc | jhmarcus | 2019-04-19 | init badmixture sim |
html | e32adcc | jhmarcus | 2019-04-19 | init badmixture sim |
Rmd | 0a3374d | jhmarcus | 2019-04-15 | added simple sim |
html | 0a3374d | jhmarcus | 2019-04-15 | added simple sim |
html | 71e0580 | Peter Carbonetto | 2019-03-14 | Re-built home page with correct top-right link. |
html | 820a40e | Peter Carbonetto | 2019-03-14 | Added link to hoa_global_alt analysis in home page. |
Rmd | 4c8921b | Peter Carbonetto | 2019-03-14 | wflow_publish(“index.Rmd”) |
html | 9d521a9 | jhmarcus | 2019-03-05 | Build site. |
Rmd | d2573ea | jhmarcus | 2019-03-05 | updated idx |
html | d2573ea | jhmarcus | 2019-03-05 | updated idx |
html | 9a69c08 | jhmarcus | 2019-03-04 | updated data hoa |
Rmd | a1580ed | jhmarcus | 2019-03-04 | added data exploration |
html | a1580ed | jhmarcus | 2019-03-04 | added data exploration |
html | c203e00 | jhmarcus | 2019-03-03 | Build site. |
html | 90a0a02 | jhmarcus | 2019-02-28 | updated to autosomes and added manhatten plot |
html | 38a461d | jhmarcus | 2019-02-24 | built all |
html | 7644d40 | jhmarcus | 2019-02-24 | updated index |
Rmd | 38b57c5 | jhmarcus | 2019-02-24 | simplified greedy flash global analysis |
html | 403bc6b | jhmarcus | 2019-02-15 | added hide code blocks |
html | b4749ac | jhmarcus | 2019-02-15 | fixed some typos |
html | 7a2b6c7 | jhmarcus | 2019-02-15 | added backfit |
Rmd | f5ef1af | jhmarcus | 2019-02-15 | added workflows for human origins datasets |
html | f5ef1af | jhmarcus | 2019-02-15 | added workflows for human origins datasets |
html | 31a16c6 | jhmarcus | 2019-02-14 | added hists of factors |
html | 9538510 | jhmarcus | 2019-02-13 | switched to struct style plot |
html | 63c2b75 | jhmarcus | 2019-02-13 | added softimpute |
html | 7b6ecbc | jhmarcus | 2019-02-12 | made fig size bigger |
Rmd | 5c0f91a | jhmarcus | 2019-02-12 | init flash proof of principle |
html | 5c0f91a | jhmarcus | 2019-02-12 | init flash proof of principle |
Rmd | 46105ee | jhmarcus | 2019-02-11 | Start workflowr project. |
Authors: Joe Marcus and Jason Willwerscheid
Advisors: John Novembre, Peter Carbonetto, and Matthew Stephens
Less simple admixture event:
Coalescent simulations:
Coalescent simulations with fixed shared factor:
Four-population tree:
Other prior families:
Before 2019-12-01:
These vignettes describe results on simulated / empirical data: