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Last update:

[1] "Tue Nov  2 10:35:43 2021"

Fold performances of “SVM MBO No Filter” on the HR Task

(Table) T1 All leaner/filter/task combinations ordered by performance.

Overall leaderboard across all settings, sorted ascending by performance.

(Table) T2 Best learner/filter/task combination

Learners: On which task and using which filter did every learner score their best result on?

*CV: L2 penalized regression using the internal 10-fold CV tuning of the glmnet package

*MBO: L2 penalized regression using using MBO for hyperparameter optimization.

(Table) T3 All leaner/filter/task combinations ordered descending by performance.

Overall leaderboard across all settings, sorted descending by performance.

(Plot) P1 Best learner/filter combs for all tasks

Version Author Date
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(Plot) P2 Scatterplots of filter methods vs. no filter for each learner and task

Showing the final effect of applying feature selection to a learner for each task. All filters are colored in the same way whereas using “no filter” appears in a different color.

Version Author Date
c56ffc4 pat-s 2021-08-18
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(Plot) P3 Scatterplots of filter methods vs. Borda for each learner and task

Showing the final effect of applying feature selection to a learner for each task. All filters are summarized into a a single color whereas the “Borda” filter appears in its own color.

Version Author Date
c56ffc4 pat-s 2021-08-18
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b24002a pat-s 2021-06-22
2c8ad62 pat-s 2021-06-11
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(Table) T4 Number of features selected during tuning

The model/task combinations which were selected relate to the best performance of the respective algorithm on the HR-NRI-VI task in the overall benchmark.

Fold IDs are different for each learner, i.e. a specific plot does not always resolve to “fold 1” for each learner. See bmr_inspect_tune[["results"]][["hr_nri_vi"]][["RF MBO Relief"]][["pred"]][["instance"]][["test.inds"]].

Thus, we need to manually label the fold IDs to plot names for each learner.

Example for RF on fold 1 (Luiando):

RF

SVM

XGBoost

Aggregated mean and standard deviation:


R version 4.0.4 (2021-02-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
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[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
 [1] forcats_0.5.1     dplyr_1.0.4       mlr_2.19.0.9000   ParamHelpers_1.14
 [5] here_1.0.1        ggpubr_0.4.0      ggrepel_0.9.1     ggsci_2.9        
 [9] ggbeeswarm_0.7.0  ggplot2_3.3.3     flextable_0.6.3   xtable_1.8-4     
[13] usethis_2.0.0     magrittr_2.0.1    drake_7.13.2     

loaded via a namespace (and not attached):
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  [4] ellipsis_0.3.1     rio_0.5.16         rprojroot_2.0.2   
  [7] base64enc_0.1-3    fs_1.5.0           rstudioapi_0.13   
 [10] farver_2.0.3       DT_0.17            xml2_1.3.2        
 [13] splines_4.0.4      R.methodsS3_1.8.1  knitr_1.31        
 [16] mco_1.15.6         jsonlite_1.7.2     workflowr_1.6.2   
 [19] broom_0.7.4        R.oo_1.24.0        mlrMBO_1.1.5      
 [22] compiler_4.0.4     httr_1.4.2         backports_1.2.1   
 [25] Matrix_1.3-2       lazyeval_0.2.2     cli_2.4.0         
 [28] later_1.1.0.1      htmltools_0.5.1.1  prettyunits_1.1.1 
 [31] tools_4.0.4        igraph_1.2.6       misc3d_0.9-0      
 [34] gtable_0.3.0       glue_1.4.2         fastmatch_1.1-0   
 [37] Rcpp_1.0.6         parallelMap_1.5.0  carData_3.0-4     
 [40] cellranger_1.1.0   vctrs_0.3.6        RJSONIO_1.3-1.4   
 [43] crosstalk_1.1.1    xfun_0.20          stringr_1.4.0     
 [46] openxlsx_4.2.3     lifecycle_0.2.0    renv_0.13.2       
 [49] rstatix_0.6.0      scales_1.1.1       hms_1.0.0         
 [52] promises_1.1.1     parallel_4.0.4     plot3D_1.3        
 [55] RColorBrewer_1.1-2 BBmisc_1.11        yaml_2.2.1        
 [58] curl_4.3           gdtools_0.2.3      DiceKriging_1.5.8 
 [61] stringi_1.5.3      highr_0.8          checkmate_2.0.0   
 [64] lhs_1.1.1          filelock_1.0.2     zip_2.1.1         
 [67] storr_1.2.5        rlang_0.4.10       pkgconfig_2.0.3   
 [70] systemfonts_1.0.0  evaluate_0.14      lattice_0.20-41   
 [73] ggbeeswarm2_0.7.0  purrr_0.3.4        labeling_0.4.2    
 [76] htmlwidgets_1.5.3  tidyselect_1.1.0   R6_2.5.0          
 [79] generics_0.1.0     base64url_1.4      txtq_0.2.3        
 [82] pillar_1.4.7       haven_2.3.1        whisker_0.4       
 [85] foreign_0.8-81     withr_2.4.1        abind_1.4-5       
 [88] survival_3.2-7     tibble_3.0.6       crayon_1.4.0      
 [91] car_3.0-10         uuid_0.1-4         plotly_4.9.3      
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[100] git2r_0.28.0       digest_0.6.27      tidyr_1.1.2       
[103] httpuv_1.5.5       R.utils_2.10.1     munsell_0.5.0     
[106] beeswarm_0.2.3     viridisLite_0.3.0  vipor_0.4.5       
[109] tcltk_4.0.4