Dose-Response Assay Compilation
Last updated: 2021-04-07
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|---|---|---|---|---|
| Rmd | 59b9a05 | sam-widmayer | 2021-04-07 | explicit DRC plotting |
| html | 0a1d24d | sam-widmayer | 2021-04-07 | Build site. |
| Rmd | 0cc26e9 | sam-widmayer | 2021-04-07 | require ggbeeswarm |
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| Rmd | 3720d88 | sam-widmayer | 2021-03-29 | integrate toxin24A |
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| Rmd | 32ad79a | sam-widmayer | 2021-03-21 | heatmap outputs |
| Rmd | 7ccc7de | sam-widmayer | 2021-03-21 | heatmap outputs |
| Rmd | 01b3361 | sam-widmayer | 2021-03-21 | heatmap outputs |
| Rmd | 7eb07f1 | sam-widmayer | 2021-03-21 | toxin23 updates and Worm_Length filter for MDHD data |
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| Rmd | 46c9647 | sam-widmayer | 2021-03-06 | static working directory |
| Rmd | 41bdaa0 | sam-widmayer | 2021-03-05 | dynamic working directory |
| Rmd | 0c9d312 | sam-widmayer | 2021-03-05 | initiate toxin DRC analysis repo |
Purpose:
- Compile past assay results.
- Provide dose-response curves for each toxin.
Analysis Date: April 07, 2021
Assay Summary
Metadata_Experiment bleach median cv.censor
1 toxin09A 1 0.3836145 0
2 toxin10A 1 0.4305145 0
3 toxin11A 1 0.4277093 0
4 toxin14A 1 0.3309190 0
5 toxin14A 2 0.6202207 1
6 toxin14A 3 0.3139512 0
7 toxin14B 1 0.3531075 0
8 toxin14B 2 0.6821373 1
9 toxin14B 3 0.4144394 0
10 toxin15A 1 0.3776043 0
11 toxin15A 2 0.3237794 0
12 toxin15A 3 0.5858180 1
13 toxin15B 1 0.3014705 0
14 toxin15B 2 0.3782805 0
15 toxin15B 3 0.5791055 1
16 toxin16A 1 0.3024091 0
17 toxin16A 2 0.6394078 1
18 toxin16A 3 0.6430524 1
19 toxin17A 1 0.3203867 0
20 toxin17A 2 0.5750981 1
21 toxin17A 3 0.3401813 0
22 toxin18A 1 0.3202607 0
23 toxin18A 2 0.3228881 0
24 toxin18A 3 0.3338709 0
25 toxin19A 1 0.3333869 0
26 toxin19A 2 0.3179010 0
27 toxin19A 3 0.3330344 0
28 toxin22A 1 0.2625332 0
29 toxin22A 2 0.2967801 0
30 toxin22A 3 0.2706957 0
31 toxin23A 1 0.3243216 0
32 toxin23A 2 0.3411546 0
33 toxin23A 3 0.2809086 0
34 toxin24A 1 0.2672445 0
35 toxin24A 2 0.3018825 0
36 toxin24A 3 0.3152494 0
37 toxin25A 1 0.3024884 0
38 toxin25A 2 0.2940015 0
39 toxin25A 3 0.3507315 0 Df Sum Sq Mean Sq F value Pr(>F)
assay 14 2.2442 0.16030 17.445 < 2e-16 ***
as.factor(bleach) 2 0.5740 0.28701 31.235 6.97e-13 ***
strain 7 0.1164 0.01663 1.810 0.0856 .
assay:as.factor(bleach) 22 1.9273 0.08760 9.534 < 2e-16 ***
Residuals 260 2.3891 0.00919
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Silver
Cadmium
Copper
Nickel
Paraquat
Zinc
Pyraclostrobin
Aldicarb
Chlorfenapyr
Methomyl
Methyl Mercury
Triphenyl phosphate
Arsenic trioxide
Carbaryl
Carboxin
Chlorpyrifos
[1] "Excluding toxin17A: No Response"
Lead (II) nitrate
%20nitrate-1.png)
%20nitrate-2.png)
%20nitrate-3.png)
Atrazine
[1] "Excluding toxin16A: Inaccurate Dilution Series"
2,4-D
Malathion
Chlorothalonil
Deltamethrin
| Version | Author | Date |
|---|---|---|
| deb1df5 | sam-widmayer | 2021-03-21 |
Error in optim(startVec, opfct, hessian = TRUE, method = optMethod, control = list(maxit = maxIt, :
non-finite finite-difference value [3]
[1] "Unable to optimize model"
[1] "Unable to optimize model"
Mancozeb
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
EC Estimates
EC10
EC50
EC90
Summary Tables
Table: Aldicarb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- ------------
ECA396 106.19±5.26 119.39±5.14 119.57±4.9
CB4856 116.25±6.36 130.8±6.3 131.19±6.01
ECA36 126.87±6.17 140.64±5.88 140.81±5.66
MY16 75.21±5.64 81.46±5.03 81.67±4.79
XZ1516 135.86±7.41 151.55±7.85 151.44±7.6
RC301 85.86±5.27 95.23±4.71 95.06±4.47
PD1074 93.82±4.98 105.8±4.46 106.36±4.24
ECA248 100.48±6.92 112.59±6.84 112.72±6.51
Table: Aldicarb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
ECA396 327.15±16.51 333.81±16.72 345.67±18.98
CB4856 356.74±13.9 351.65±15.96 352.61±16.21
ECA36 369.01±11.06 361.71±11.99 363.81±12.03
MY16 230.52±13.76 237.66±16.61 244.01±17.83
XZ1516 357.46±13.56 353.74±13.9 352.49±14.11
RC301 272.07±12.99 282.15±13.56 288.18±15.05
PD1074 275.54±9.11 272.47±8.39 271.38±8.35
ECA248 328.04±18.04 337.15±24.07 341.44±27.43
Table: Aldicarb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- --------------- ---------------
ECA396 670.14±56.57 933.29±98.86 999.34±112
CB4856 728.94±44.97 945.42±91.73 947.75±90.13
ECA36 728.66±35.77 930.24±69.6 939.98±68.16
MY16 470.65±47.59 693.4±97.41 729.07±106.04
XZ1516 662.17±41.04 825.65±73.37 820.45±70.74
RC301 567.42±50.45 835.93±88.46 873.63±97.8
PD1074 547.47±34.62 701.69±48.32 692.39±46.14
ECA248 697.25±61.12 1009.58±148.13 1034.22±167.11
Table: Arsenic trioxide Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- ------------- --------------
PD1074 424.78±310.18 852.9±932.35 639.16±201.42
Table: Atrazine Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- --------------- --------------
ECA248 231.03±45.22 305.76±96.3 610.18±710.96
PD1074 323.78±159.61 430.95±237.65 NA
XZ1516 259.56±83.83 338.98±134.82 604.71±670.12
RC301 180.06±17.9 221.04±30.53 279.45±92.4
CB4856 302.15±214.96 452.74±379.63 NA
ECA36 551.13±889.49 832.27±1429.92 NA
ECA396 259.49±90.99 400.28±199.19 NA
Table: Atrazine Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- ----------
ECA248 740.46±247.7 NA NA
XZ1516 914.35±412.62 NA NA
RC301 603.8±106.15 824.22±223.15 NA
Table: Cadmium dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
MY16 31.41±1.6 34.32±1.54 35.15±1.6
XZ1516 32.97±1.57 35.32±1.43 35.98±1.45
CB4856 22.84±1.41 25.31±1.37 25.53±1.33
RC301 28.57±1.54 31.69±1.61 32.62±1.72
PD1074 26.41±1.51 29.47±1.53 30.17±1.55
ECA248 24.23±1.68 27.37±1.82 28.15±1.83
ECA36 30.36±2.19 32.93±2.02 33.46±2.01
ECA396 34.44±1.54 36.87±1.37 37.58±1.36
Table: Cadmium dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
MY16 69.11±1.89 67.74±2.33 67±2.13
XZ1516 74.19±1.79 74.05±2.56 72.94±2.45
CB4856 65.95±2.42 70.31±4.26 70.31±4.96
RC301 67.66±1.77 67.92±2.39 66.73±2.23
PD1074 65.55±1.99 65.4±2.66 64.44±2.49
ECA248 61.87±2.49 62.48±3.31 61.43±3.11
ECA36 74.91±2.64 77.28±4.39 76.18±4.59
ECA396 70.91±1.69 68.23±1.99 67.73±1.78
Table: Cadmium dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -------------
MY16 114.24±4.58 133.71±10.52 127.7±9.27
XZ1516 124.39±4.6 155.26±11.95 147.88±11.23
CB4856 129.63±7.91 195.31±26.19 193.63±29.32
RC301 117.2±4.76 145.54±12.8 136.48±11.47
PD1074 117±5.58 145.13±14.15 137.61±12.5
ECA248 112.43±7.43 142.61±18.65 134.06±16.28
ECA36 133.19±7.76 181.37±23.33 173.4±23.71
ECA396 112.35±3.75 126.27±7.92 122.06±6.79
Table: Carbaryl Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- --------------
RC301 153.86±13.45 206.66±31.25 318.49±148.7
MY16 115.77±4.5 131.85±4.29 135.52±4.16
XZ1516 138.51±5.63 160.03±6.16 167.91±8.08
ECA248 215.06±13.53 263.15±26.42 350.16±107.75
CB4856 200.77±7.47 224.45±7.79 232.64±9.74
ECA396 118.25±6.19 134.47±5.88 138.17±5.63
ECA36 282.12±38.73 391.53±85.12 NA
Table: Carbaryl Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- -------------
RC301 560.72±88.19 899.1±242.48 NA
MY16 329.43±10.08 372.72±19.75 377.73±25.18
XZ1516 396.9±19.22 480.15±41.68 527.38±71.69
ECA248 599.91±67.03 828.28±158.41 NA
CB4856 477.83±21.16 543.72±40.07 589.88±68.61
ECA396 334.69±14.2 365.03±24.39 365.57±28.19
ECA36 823.29±165.63 NA NA
Table: Carbaryl Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -----------
MY16 641.47±34.4 NA NA
XZ1516 776.32±60.67 NA NA
CB4856 830.35±58.18 NA NA
ECA396 649.51±47.04 990.92±136.9 967.21±149
Table: Carboxin Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
RC301 245.37±13.69 268.12±13.33 271.54±13.17
MY16 208.99±11.87 232.92±11.41 236.38±11.06
XZ1516 246.6±16.77 281.8±17.27 286.26±17.03
PD1074 294.44±24.48 321.2±23.59 326.03±23.43
ECA248 264.83±20 294.25±19.9 298.93±19.58
CB4856 218.08±16.13 242.89±15.96 246.14±15.48
ECA396 270.53±11.22 295.77±10.69 298.53±10.38
ECA36 343.43±23.11 376.82±22.71 382.09±22.25
Table: Carboxin Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
RC301 518.27±12.99 520.48±15.19 514.66±14.85
MY16 542.31±16.17 559.04±22.25 551.86±22.67
XZ1516 634.1±24.55 652.59±34.08 647.19±35.34
PD1074 762.58±35.12 837.75±72.34 829.67±86.63
ECA248 653.85±27.45 672.27±39.66 662.19±40.07
CB4856 567.38±22.5 585.55±31.62 575.34±31.85
ECA396 543.23±11.13 538.19±12.02 534.45±11.71
ECA36 721.61±27.71 712.59±33.79 705.55±31.94
Table: Carboxin Estimates
Strain Weibull Log-Logistic Lognormal
------- --------------- --------------- ---------------
RC301 834.65±39.4 1010.37±74.89 975.44±68.53
MY16 995.79±54.82 1341.73±127.72 1288.38±122.31
XZ1516 1157.57±81.68 1511.25±193.26 1463.19±189.76
PD1074 1398.49±106.11 NA NA
ECA248 1163.1±82.92 1535.93±209.95 1466.89±201.43
CB4856 1043.54±72.96 1411.64±179.5 1344.81±169.67
ECA396 847.09±31.39 979.33±52.28 956.83±47.61
ECA36 1158.26±71.01 1347.56±144.72 1302.84±129.29
Table: Chlorfenapyr Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ----------
ECA396 0.44±0.02 0.48±0.02 0.49±0.02
CB4856 0.26±0.01 0.27±0.01 0.27±0.01
ECA36 0.94±0.03 1.03±0.03 1.05±0.02
MY16 0.19±0.01 0.2±0.01 0.21±0.01
XZ1516 0.29±0.01 0.32±0.01 0.32±0.01
RC301 0.21±0.01 0.22±0.01 0.22±0.01
PD1074 0.31±0.01 0.31±0.01 0.31±0.01
ECA248 0.19±0.01 0.2±0.01 0.2±0.01
Table: Chlorfenapyr Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ----------
ECA396 0.76±0.03 0.72±0.02 0.73±0.02
CB4856 0.54±0.01 0.53±0.01 0.53±0.01
ECA36 1.65±0.04 1.53±0.04 1.53±0.04
MY16 0.49±0.02 0.49±0.02 0.49±0.02
XZ1516 0.65±0.01 0.65±0.01 0.64±0.01
RC301 0.48±0.01 0.47±0.01 0.46±0.01
PD1074 0.57±0.01 0.58±0.01 0.58±0.01
ECA248 0.5±0.02 0.49±0.02 0.49±0.02
Table: Chlorfenapyr Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ----------
ECA396 1.09±0.07 1.07±0.09 1.08±0.08
CB4856 0.84±0.02 1.05±0.05 1.03±0.05
ECA36 2.34±0.08 2.26±0.14 2.24±0.13
MY16 0.9±0.05 1.19±0.1 1.14±0.09
XZ1516 1.09±0.05 1.31±0.08 1.3±0.07
RC301 0.82±0.03 1.01±0.05 0.97±0.05
PD1074 0.84±0.03 1.08±0.05 1.09±0.05
ECA248 0.94±0.06 1.24±0.12 1.2±0.11
Table: Chlorothalonil Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- ------------- ------------
PD1074 33.57±17.14 58.34±45.23 NA
ECA36 27.12±6.11 38.09±16.06 64.47±98.41
ECA396 38.24±7.05 51.8±15.79 80.42±68.34
RC301 164.03±519.98 NA NA
XZ1516 49.13±6 55.59±6.36 58.19±9.26
Table: Chlorothalonil Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- -------------
PD1074 208.51±159.34 NA NA
ECA36 124.4±52.06 223.48±182.07 NA
ECA396 155.5±52.26 NA NA
XZ1516 127.54±16.01 153.29±37.18 174.57±75.71
Table: Chlorothalonil Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
XZ1516 234.24±48.59 NA NA
Table: Chlorpyrifos Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- ------------
MY16 15.55±39.17 NA NA
XZ1516 2.72±0.14 3.2±0.18 3.53±0.37
PD1074 2.71±4.57 8.49±13.73 NA
ECA248 2.06±0.98 3.57±2.32 12.24±14.97
CB4856 3.88±3.06 10.87±10.59 NA
ECA396 3.79±6.17 10.36±20.26 NA
ECA36 1.81±0.11 2.27±0.18 2.67±0.41
Table: Chlorpyrifos Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -----------
XZ1516 8.19±0.61 10.39±1.32 13.29±3.38
ECA248 17.87±12.12 NA NA
ECA36 7.39±0.76 10.32±1.69 14.8±4.74
Table: Chlorpyrifos Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- ----------
XZ1516 16.56±1.87 NA NA
ECA36 18.1±2.6 NA NA
Table: Copper(II) chloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- -------------- -----------
RC301 53.28±4.21 58.29±3.5 62.02±7.67
XZ1516 NA 81.73±9.29 81.76±8.04
PD1074 NA 192.19±168.33 NA
ECA36 NA 76.64±13.08 NA
Table: Copper(II) chloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -------------
RC301 112.02±8.09 131.54±19.64 164.25±55.56
XZ1516 NA 121.15±23.65 151.24±64.36
ECA36 NA 178.38±67.26 NA
Table: Copper(II) chloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
RC301 179.87±25.31 NA NA
XZ1516 NA 179.58±89.46 NA
Table: Deltamethrin Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ------------
PD1074 0.04±0.23 0.33±2.41 0.43±2.35
CB4856 0.15±0.58 16.9±76.2 21.17±77.68
ECA36 0±0 0±0 0±0
MY16 0.21±0.46 0.49±2.62 0.91±4.32
ECA396 0.18±0.67 26.52±85.9 1.36±3.48
RC301 0.54±4.71 0.98±4.87 2.43±14.96
XZ1516 0±0 NA 0±0
Table: Deltamethrin Estimates
Strain Weibull Log-Logistic Lognormal
------- --------------- --------------- --------------
ECA36 319.82±7642.14 38.64±432.2 22.07±288.54
XZ1516 0±0 NA 24.67±2748.05
PD1074 NA 306.46±2784.41 466.6±6933.93
CB4856 NA 163.38±158.03 156.8±160.65
ECA396 NA 181.73±145.01 NA
Table: Deltamethrin Estimates
Strain Weibull Log-Logistic Lognormal
------- -------- ---------------- ---------------
CB4856 NA 1579±4811.27 1161.27±2335.7
ECA396 NA 1245.31±2455.33 NA
Table: Lead(II) nitrate Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- ------------- ----------
ECA36 233.52±141.68 556.99±619.9 NA
Table: Malathion Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
PD1074 43.1±8.32 55.03±8.58 57.77±8.27
CB4856 63.14±15.09 81.48±14.72 82.1±13.75
ECA36 154.44±41.48 173.94±39.44 175.59±37.24
MY16 57.84±16.26 73.8±16.64 75.96±15.69
ECA396 58.18±12.11 72.53±11.98 75.55±11.52
RC301 24.24±6.59 33.82±7.15 36.21±7.04
XZ1516 53.69±12.95 73.68±13.64 77.04±13.05
ECA248 65.46±21.75 71.99±24.52 73.54±25.32
Table: Malathion Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- -------------- --------------
PD1074 237.01±17.55 239.09±20.55 232.69±19.32
CB4856 236.07±22.03 228.05±20.67 226.28±20.44
ECA36 578.45±86.47 589.44±116.12 582.05±117.28
MY16 227.41±29.29 213.51±28.3 212.64±27.16
ECA396 242.49±22.58 233.04±23.45 231.16±22.3
RC301 139.79±11.92 139.37±12.11 136.55±11.53
XZ1516 367.59±50.61 376.79±63.33 376.73±64.69
ECA248 182.41±22.05 179.76±23.21 176.34±22.91
Table: Malathion Estimates
Strain Weibull Log-Logistic Lognormal
------- --------------- --------------- ---------------
PD1074 702.33±101.76 1038.8±234.25 937.23±189.82
CB4856 547.07±103.75 638.28±137.36 623.64±120.97
ECA36 1341.97±345.75 1997.5±866.47 1929.38±827.65
MY16 544.19±119.51 617.68±189.19 595.26±160.82
ECA396 602.25±103.68 748.74±183.23 707.28±155.82
RC301 426.97±69.66 574.25±137.49 514.92±107.57
XZ1516 1252.49±351.79 1926.96±795.09 1842.32±737.53
ECA248 350.51±65.05 448.83±158.07 422.87±142.46
Table: Mancozeb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- --------------
MY16 77.26±4.14 83.82±4.12 85.84±4.98
ECA248 59.8±2.37 66.35±2.46 68.55±3.05
RC301 83.54±50.09 121.97±81.24 227.98±166.26
ECA36 53.66±6.9 71.71±13.83 128.15±82.13
ECA396 59.21±4.28 72.71±7.47 100.19±29.71
PD1074 41.08±3.31 52.97±6.17 74.24±23.45
XZ1516 96.61±24.43 126.74±39.97 NA
CB4856 46.73±1.84 56.28±3.13 65.07±7.91
Table: Mancozeb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
MY16 152.35±9.43 164.97±16.41 176.45±27.63
ECA248 138.51±6.89 154.06±12.04 166.69±19.64
ECA36 189.45±40.35 NA NA
ECA396 176.14±22.61 240.97±45.71 NA
PD1074 159.8±23.85 233.97±52.49 NA
CB4856 140.11±10.02 185.88±22.91 NA
Table: Mancozeb Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
MY16 234.85±22.96 NA NA
ECA248 236.56±18.17 NA NA
Table: Manganese dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------------- --------------- --------------
PD1074 493.38±73.5 586.18±125.39 639.75±257.73
MY16 1820.28±1973.15 NA NA
RC301 1141.28±129.55 1212.69±191.27 NA
Table: Manganese dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- --------------- ---------------- ----------------
PD1074 1220.87±307.8 1655.46±1033.91 1906.81±2140.97
RC301 1575.29±155.27 1871.07±792.42 NA
Table: Manganese dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- ------------- ----------
RC301 1934.45±391.2 NA NA
Table: Methomyl Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
ECA396 12.03±0.69 13.39±0.65 13.55±0.63
CB4856 13.75±0.7 14.96±0.66 15.02±0.66
ECA36 11.7±0.72 13.3±0.67 13.37±0.68
MY16 11.81±0.69 13.18±0.64 13.29±0.62
XZ1516 10.75±0.7 11.96±0.66 12.08±0.66
RC301 12.32±0.73 13.53±0.67 13.67±0.67
PD1074 10.76±0.71 12.02±0.73 12.18±0.74
ECA248 18.31±1.75 18.96±1.47 19.02±1.46
Table: Methomyl Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
ECA396 36.19±1.46 39.53±2.75 40.7±3.68
CB4856 36.08±0.99 37.83±1.7 37.69±1.97
ECA36 37.83±1.19 38.55±1.36 38.16±1.4
MY16 37.04±1.41 40.75±2.39 41.48±2.96
XZ1516 32.62±1.2 34.2±1.87 34.15±2.07
RC301 34.33±1.06 35.4±1.5 35.3±1.57
PD1074 31.22±1.48 34.3±2.67 34.52±3.36
ECA248 40.73±1.75 42.01±2.6 42.07±2.82
Table: Methomyl Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -------------
ECA396 73.03±4.8 116.76±16.38 122.28±21.79
CB4856 66.72±2.93 95.68±9.44 94.55±10.8
ECA36 79.91±4.95 111.78±9.58 108.94±9.47
MY16 76.75±5.04 125.94±15.47 129.45±18.85
XZ1516 66.17±4.02 97.81±11.81 96.5±12.8
RC301 65.99±3.53 92.58±9.1 91.2±9.35
PD1074 61.55±4.77 97.89±16.39 97.85±20.03
ECA248 67.79±5.38 93.08±13.39 93.06±14.53
Table: Methylmercury dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ----------
ECA396 2.3±0.22 2.78±0.24 2.88±0.25
CB4856 1.66±0.2 2.11±0.23 2.24±0.25
ECA36 2.38±0.21 2.84±0.24 2.97±0.25
MY16 1.72±0.28 2.07±0.3 2.14±0.31
XZ1516 3.52±0.35 4.04±0.38 4.13±0.39
RC301 2.64±0.3 3.52±0.47 4.11±0.88
PD1074 2.32±0.23 3.16±0.37 3.79±0.75
ECA248 1.22±0.24 1.76±0.49 2.39±1.45
Table: Methylmercury dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- ------------
ECA396 15.73±1.97 18.51±2.76 19.88±3.51
CB4856 14.2±2.23 17.82±3.71 19.28±4.96
ECA36 21.1±2.16 25.08±3.6 28.27±5.14
MY16 12.71±2.86 15.13±3.63 16.43±4.63
XZ1516 22.61±2.39 26.51±4 28.86±5.53
RC301 19.74±3.18 30.25±7.95 44.17±21.49
PD1074 19.52±2.85 30.81±7.35 47.7±21.41
ECA248 10.61±3.63 18.76±10.88 36.23±46.04
Table: Methylmercury dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ -------------- -------------
ECA396 53.59±9.52 123.29±32.58 137.08±42.7
CB4856 55.77±12.9 150.16±56.21 166.17±76.09
ECA36 84.74±12.2 221.88±55.19 NA
MY16 45.4±14.59 110.74±47.08 126.01±63.06
XZ1516 73.95±10.99 173.68±45.6 201.5±67.63
RC301 71.1±16.11 NA NA
PD1074 75.95±15.93 NA NA
ECA248 42.13±20.59 199.52±184.63 NA
Table: Nickel dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
ECA396 49.7±2.61 50.33±2.22 50.28±1.96
CB4856 49.71±2.86 50.28±2.4 50.43±2.09
ECA36 52.92±2.95 57.57±2.02 59.8±2.85
MY16 42.6±2.83 45.4±2.33 45.84±2.14
PD1074 62.34±4.45 63.61±3.87 62.17±3.09
Table: Nickel dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -------------
ECA396 86.77±1.57 85.7±1.93 84.36±1.9
CB4856 84.76±1.81 82.79±2.13 81.59±2.04
ECA36 110.04±4.75 127.77±12.22 143.71±26.28
MY16 93.5±2.79 102.13±6.2 103.29±8.48
PD1074 103.72±1.97 107.44±4.11 109.84±5.83
Table: Nickel dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ------------
ECA396 123.76±3.33 145.93±7.24 141.52±6.56
CB4856 119.1±3.35 136.32±6.84 132±6.04
ECA36 175.46±16.36 NA NA
MY16 154.31±9.69 NA NA
PD1074 143.47±8.58 181.45±22.12 194.08±26.6
Table: Paraquat Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
MY16 42.51±3.9 41.18±3.32 39.89±2.91
XZ1516 49.37±4.99 57.65±4.75 59.04±4.48
CB4856 40.38±3.35 40.62±2.9 39.46±2.7
RC301 15.69±1.75 22.62±1.85 22.84±1.66
PD1074 29.15±2.86 28.51±2.26 27.44±2.12
ECA248 29.11±3.68 28.73±2.32 28.45±2.28
ECA36 56.24±4.19 46.32±3.49 45.9±3.55
ECA396 15±1.59 21.65±1.64 21.82±1.5
Table: Paraquat Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
MY16 126.27±7.03 143.14±10.59 157.95±12.48
XZ1516 314.52±29.47 291.05±33.65 302.29±34.18
CB4856 127.35±6.29 138.36±8.69 149.29±10.9
RC301 132.47±13.53 113.76±9.99 124.26±10.77
PD1074 99.37±4.54 110.12±6.65 118.23±8.92
ECA248 86.06±4.61 94.06±5.71 97.15±6.63
ECA36 105.31±2.6 112.07±5.17 114.49±6.19
ECA396 126±11.04 108.5±7.86 116.76±8.2
Table: Paraquat Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- ---------------
MY16 252.72±28.75 497.57±94.41 625.46±116.71
XZ1516 1023.66±146.7 1469.48±325.3 1547.64±331.52
CB4856 264.81±25.8 471.32±74.8 564.83±99.15
RC301 515.82±96.76 572.24±118.93 676.16±128.82
PD1074 217.13±22.2 425.4±69.17 509.35±97.36
ECA248 171.73±23.93 307.92±49.24 331.75±57.85
ECA36 157.05±6.09 271.17±37.15 285.56±44.67
ECA396 489.11±80.73 543.61±93.74 624.93±97.74
Table: Propoxur Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
PD1074 102.71±17.64 128.4±18.79 135.24±17.89
CB4856 204.62±27.23 227.04±26.01 229.08±24.5
ECA36 147±24.67 172.88±24.52 174.54±23.12
MY16 129.82±15.09 146.53±15.24 148.41±14.36
ECA396 97.45±18.41 121.89±18.14 126.27±17.17
RC301 85.92±11.72 103.31±11.88 108.98±11.35
XZ1516 156.32±21.94 182.46±20.94 185.29±19.86
Table: Propoxur Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- -------------
PD1074 462.46±37.45 445.04±41.43 432.96±37.42
CB4856 494.38±28.99 472.34±29.93 468.21±28.86
ECA36 454.63±31.42 438.07±32.39 431.67±31.38
MY16 367.86±17.6 359.19±19.56 352.43±18.96
ECA396 353.17±31.85 336.68±31.64 334.18±29.93
RC301 367.75±22.54 361.68±25.85 352.48±23.76
XZ1516 407.88±25.76 388.23±25.26 386.84±24.42
Table: Propoxur Estimates
Strain Weibull Log-Logistic Lognormal
------- --------------- --------------- ---------------
PD1074 1206.49±150.61 1542.49±324.65 1386.09±248.18
CB4856 867.38±76.98 982.68±122.49 956.97±109.58
ECA36 933.57±107.49 1110.02±175.15 1067.6±151.52
MY16 714.39±54.4 880.49±102.47 836.9±89.71
ECA396 802.36±124.64 929.94±196.43 884.42±164.17
RC301 928.94±98.21 1266.21±212.74 1140.01±168.61
XZ1516 751.59±75.68 826.03±110 807.61±97.65
Table: Pyraclostrobin Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
ECA248 8.25±1.62 10.95±1.92 11.53±1.98
XZ1516 11.15±1.12 14.35±1.31 14.97±1.33
ECA36 11.06±0.76 14.43±0.85 15±0.87
CB4856 11.78±1.14 14.95±1.29 15.49±1.3
ECA396 6.98±0.66 8.7±0.72 8.98±0.73
PD1074 12.2±0.8 15.36±0.88 15.75±0.88
RC301 17.27±1.74 21.02±1.82 21.31±1.77
MY16 6.79±0.72 8.95±0.84 9.32±0.84
Table: Pyraclostrobin Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -------------
ECA248 92.17±10.54 104.78±18.2 101.26±18.97
XZ1516 91.26±5.11 94.23±6.91 90.66±6.61
ECA36 78.65±2.91 79.02±3.32 77.35±3.25
CB4856 100.63±6.04 107.88±9 104.37±9.07
ECA396 47.84±3.17 53.28±4.72 52.99±5.13
PD1074 98.62±3.93 105.55±5.59 103.59±5.85
RC301 94.25±5.42 93.51±5.98 92.03±5.82
MY16 76.77±5.29 84.97±8.22 82.82±8.56
Table: Pyraclostrobin Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- --------------- --------------
ECA248 429.08±85.66 1002.86±401.98 889.07±378.1
XZ1516 348.49±32.94 618.76±105.63 548.97±90.54
ECA36 274.59±18.9 432.59±44.76 399.02±39.81
CB4856 394.82±39.31 778.18±144.07 703±133.32
ECA396 163.08±19.05 326.44±64.19 312.77±65.53
PD1074 373.52±26.41 725.34±88.28 681.17±86.1
RC301 277.93±28.44 415.98±60.75 397.5±55.34
MY16 360.29±42.25 806.45±173.01 736.31±164.86
Table: Silver nitrate Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- -------------- ------------
MY16 3.41±4.53 9.04±12.88 51.77±24.47
XZ1516 9.32±2.44 14.5±4.46 29.36±22.24
PD1074 48.66±109.47 106.47±406.52 NA
ECA36 46.76±82.57 104.41±174.59 NA
ECA248 83.76±163.6 NA NA
CB4856 26.28±46.93 69.71±137.69 NA
Table: Silver nitrate Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
XZ1516 134.72±54.78 NA NA
Table: Triphenyl phosphate Estimates
Strain Weibull Log-Logistic Lognormal
------- ---------- ------------- ----------
MY16 0.36±0.07 0.55±0.09 0.61±0.1
XZ1516 2.18±0.48 2.66±0.52 2.75±0.54
PD1074 2.55±0.27 3.05±0.29 3.14±0.3
ECA36 1.64±0.26 2.18±0.3 2.28±0.3
ECA396 1.51±0.16 1.94±0.18 2.02±0.18
RC301 0.86±0.16 1.18±0.19 1.23±0.19
ECA248 1.78±0.21 2.26±0.23 2.32±0.23
CB4856 2.2±0.24 2.7±0.27 2.8±0.28
Table: Triphenyl phosphate Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- ------------- -----------
MY16 10.49±1.83 16.3±5.09 18.15±7.64
XZ1516 18.03±2.13 22.04±4.55 21.59±5.38
PD1074 18.18±1.01 20.81±1.87 20.14±2.04
ECA36 19.78±2.13 27.1±5.54 29.05±8.4
ECA396 16.02±1.33 19.52±2.59 19.87±3.2
RC301 13.17±1.51 18.08±3.9 19.16±5.72
ECA248 16.27±1.17 18.91±2.09 18.83±2.43
CB4856 18.83±1.17 22.7±2.49 21.99±2.85
Table: Triphenyl phosphate Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------ ------------- -------------
MY16 90.23±26.78 NA NA
XZ1516 69.27±14.72 182.43±86.7 169.55±95.27
PD1074 63.54±6.41 142.04±29.76 129.22±29.96
ECA36 96.56±18.59 NA NA
ECA396 72.16±9.81 196.05±52.87 195.04±62.43
RC301 74.78±15.87 NA NA
ECA248 66.72±8.56 157.99±39.16 152.77±42.78
CB4856 73.96±7.91 190.92±46.54 172.64±48.94
Table: 2,4-D Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- --------------
ECA36 606.32±203.47 701.36±284.54 NA
MY16 661.03±36.12 695.26±50.26 739.65±119.32
ECA396 442.68±38.97 521.7±80.49 787.12±567.66
ECA248 600.54±30.33 615.09±26.92 614.75±26.56
Table: 2,4-D Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- -------------- ------------
MY16 895.94±78.73 969.37±122.66 NA
ECA396 845.75±135.01 NA NA
ECA248 777.13±26.9 805.09±49.74 817.2±75.29
Table: 2,4-D Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
ECA248 915.87±53.67 NA NA
Table: Zinc dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ----------- -------------- -------------
MY16 57.69±3.44 74.32±7.34 106.98±36.76
XZ1516 52.17±3.36 60.97±3.78 64.58±5.5
PD1074 83.2±20.08 124.85±39.66 NA
ECA36 59.89±6.51 81.36±13.45 139.56±74.52
ECA396 35.17±1.72 41.38±1.72 43.24±2.03
RC301 49.1±3.08 59.8±4.33 69.49±11.07
ECA248 54±3.87 65.98±5.83 77.03±15.72
CB4856 84.1±48.67 159.15±117.29 NA
Table: Zinc dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- -------------- ------------- --------------
MY16 218.79±26.68 329.98±70.57 NA
XZ1516 176.88±12.79 220.01±28.75 256.95±59.3
PD1074 389.62±131.58 NA NA
ECA36 260.24±51.06 NA NA
ECA396 138.06±5.71 171.53±14.15 195.66±27.8
RC301 183.65±16.31 250.99±40.75 371.7±135.69
ECA248 194.95±22.08 266.78±54.37 388.69±182.27
Table: Zinc dichloride Estimates
Strain Weibull Log-Logistic Lognormal
------- ------------- ------------- ----------
XZ1516 385.12±45.4 NA NA
ECA396 330.04±23.73 NA NA [[1]]
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NULLToxicant Classes
drug
1 Aldicarb
2 Carbaryl
3 Methomyl
4 Propoxur
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
drug
1 Carboxin
2 Chlorothalonil
3 Mancozeb
4 Pyraclostrobin
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
drug
1 D-phenothrin
2 Deltamethrin
3 Permethrin
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
drug
1 Chlorpyrifos
2 Malathion
3 Parathion
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
drug
1 Arsenic trioxide
2 Cadmium dichloride
3 Copper(II) chloride
4 Lead(II) nitrate
5 Manganese dichloride
6 Methylmercury dichloride
7 Nickel dichloride
8 Silver nitrate
9 Zinc dichloride
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
drug
1 2,4-D
2 Atrazine
3 Paraquat
| Version | Author | Date |
|---|---|---|
| 0a1d24d | sam-widmayer | 2021-04-07 |
sessionInfo()R version 4.0.4 (2021-02-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggbeeswarm_0.6.0 cowplot_1.1.1 RColorBrewer_1.1-2 RCurl_1.98-1.2
[5] ddpcr_1.15 kableExtra_1.3.4 knitr_1.31 drc_3.0-1
[9] MASS_7.3-53 easyXpress_0.1.0 forcats_0.5.1 stringr_1.4.0
[13] dplyr_1.0.4 purrr_0.3.4 readr_1.4.0 tidyr_1.1.2
[17] tibble_3.1.0 ggplot2_3.3.3 tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] TH.data_1.0-10 colorspace_2.0-0 ellipsis_0.3.1
[4] rio_0.5.16 rprojroot_2.0.2 fs_1.5.0
[7] rstudioapi_0.13 farver_2.0.3 audio_0.1-7
[10] fansi_0.4.2 mvtnorm_1.1-1 lubridate_1.7.9.2
[13] xml2_1.3.2 codetools_0.2-18 splines_4.0.4
[16] readbitmap_0.1.5 jsonlite_1.7.2 broom_0.7.5
[19] dbplyr_2.1.0 png_0.1-7 compiler_4.0.4
[22] httr_1.4.2 backports_1.2.1 assertthat_0.2.1
[25] bmp_0.3 Matrix_1.3-2 cli_2.3.1
[28] beepr_1.3 later_1.1.0.1 htmltools_0.5.1.1
[31] tools_4.0.4 igraph_1.2.6 gtable_0.3.0
[34] glue_1.4.2 rebus.base_0.0-3 Rcpp_1.0.6
[37] carData_3.0-4 cellranger_1.1.0 jquerylib_0.1.3
[40] vctrs_0.3.6 svglite_2.0.0 xfun_0.21
[43] rebus.datetimes_0.0-1 openxlsx_4.2.3 rvest_0.3.6
[46] lifecycle_1.0.0 rebus.numbers_0.0-1 gtools_3.8.2
[49] zoo_1.8-8 scales_1.1.1 hms_1.0.0
[52] promises_1.2.0.1 sandwich_3.0-0 yaml_2.2.1
[55] curl_4.3 sass_0.3.1 stringi_1.5.3
[58] imager_0.42.7 highr_0.8 plotrix_3.8-1
[61] tiff_0.1-6 zip_2.1.1 bitops_1.0-6
[64] rlang_0.4.10 pkgconfig_2.0.3 systemfonts_1.0.1
[67] evaluate_0.14 lattice_0.20-41 labeling_0.4.2
[70] tidyselect_1.1.0 magrittr_2.0.1 R6_2.5.0
[73] generics_0.1.0 multcomp_1.4-16 DBI_1.1.1
[76] pillar_1.5.0 haven_2.3.1 whisker_0.4
[79] foreign_0.8-81 withr_2.4.1 rebus_0.1-3
[82] survival_3.2-7 abind_1.4-5 rebus.unicode_0.0-2
[85] modelr_0.1.8 crayon_1.4.1 car_3.0-10
[88] utf8_1.1.4 rmarkdown_2.7 jpeg_0.1-8.1
[91] grid_4.0.4 readxl_1.3.1 data.table_1.14.0
[94] git2r_0.28.0 reprex_1.0.0 digest_0.6.27
[97] webshot_0.5.2 httpuv_1.5.5 munsell_0.5.0
[100] beeswarm_0.2.3 viridisLite_0.3.0 vipor_0.4.5
[103] bslib_0.2.4