Meta-database: environmental and societal drivers of change in Arctic fjord ecosystems
Robert Schlegel
20 mai 2021
Last updated: 2021-05-20
Checks: 7 0
Knit directory: WP1/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
The command set.seed(20210216) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 1727cf7. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Unstaged changes:
Modified: code/functions.R
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/metadatabase.Rmd) and HTML (docs/metadatabase.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 1727cf7 | Robert | 2021-05-20 | Added GEM data to meta-database |
| html | 1727cf7 | Robert | 2021-05-20 | Added GEM data to meta-database |
| Rmd | 43ea3c8 | robwschlegel | 2021-05-07 | Updates to meta-database |
| html | 43ea3c8 | robwschlegel | 2021-05-07 | Updates to meta-database |
| Rmd | 5743fa6 | robwschlegel | 2021-05-06 | Starting in on GEM emta-data |
| Rmd | 4fd116f | Robert | 2021-04-30 | Database updates |
| html | 4fd116f | Robert | 2021-04-30 | Database updates |
| Rmd | 6e4a07b | robwschlegel | 2021-04-28 | Steps towards multi-core PANGAEA downloads and assemblies |
| Rmd | c5de9e3 | robwschlegel | 2021-04-27 | Different methods of saving PANGAEA data |
| html | c5de9e3 | robwschlegel | 2021-04-27 | Different methods of saving PANGAEA data |
| Rmd | ed75738 | robwschlegel | 2021-04-27 | Tidied up the meta-database before adding Pangae data |
| html | ed75738 | robwschlegel | 2021-04-27 | Tidied up the meta-database before adding Pangae data |
| Rmd | 57a356a | robwschlegel | 2021-04-23 | Update to meta-database intro text. |
| html | 57a356a | robwschlegel | 2021-04-23 | Update to meta-database intro text. |
| Rmd | 1f276c2 | robwschlegel | 2021-04-23 | More updates |
| html | 05db53f | robwschlegel | 2021-04-23 | Build site. |
| Rmd | 68676ee | robwschlegel | 2021-04-23 | Update to Porsangerfjorden meta-data |
| html | 68676ee | robwschlegel | 2021-04-23 | Update to Porsangerfjorden meta-data |
| Rmd | b7b88df | robwschlegel | 2021-04-21 | Update to meta-database |
| Rmd | cff7e0f | robwschlegel | 2021-04-19 | Updates to meta-database. |
| html | cff7e0f | robwschlegel | 2021-04-19 | Updates to meta-database. |
| Rmd | 55836e3 | robwschlegel | 2021-04-16 | Updates to Isfjorden meta-data |
| html | 55836e3 | robwschlegel | 2021-04-16 | Updates to Isfjorden meta-data |
| Rmd | ea2c8e7 | robwschlegel | 2021-04-15 | Update to meta-database |
| Rmd | 2fea339 | robwschlegel | 2021-04-15 | Updates to meta-database page |
| html | 2fea339 | robwschlegel | 2021-04-15 | Updates to meta-database page |
| Rmd | d63e05c | robwschlegel | 2021-04-15 | Meta-data updates from Pedro |
| Rmd | 3a43b49 | robwschlegel | 2021-04-13 | Fix a few internal links |
| html | 3a43b49 | robwschlegel | 2021-04-13 | Fix a few internal links |
| Rmd | 80c27b6 | robwschlegel | 2021-04-13 | Rearranged the key drivers table |
| html | 80c27b6 | robwschlegel | 2021-04-13 | Rearranged the key drivers table |
| html | 82c5970 | robwschlegel | 2021-04-13 | Troubleshooting GitHub pages |
| html | 90f6ec9 | robwschlegel | 2021-04-13 | Build site. |
| Rmd | 18c0f2e | robwschlegel | 2021-04-13 | Update to meta-databse |
| html | 7e3f348 | robwschlegel | 2021-04-13 | Build site. |
| Rmd | 19eac79 | robwschlegel | 2021-04-13 | Re-built site. |
| html | 0b7ee0f | robwschlegel | 2021-04-13 | Build site. |
| Rmd | 54ed685 | robwschlegel | 2021-04-01 | Added a couple more meta-data sources. |
| html | 7582d79 | robwschlegel | 2021-03-26 | Build site. |
| html | b1c8cca | robwschlegel | 2021-03-26 | Build site. |
| Rmd | a6fe134 | robwschlegel | 2021-03-26 | Re-built site. |
| Rmd | 65d120e | robwschlegel | 2021-03-24 | Some notes |
| Rmd | 9516908 | robwschlegel | 2021-03-19 | Added caption for Table 1 |
| html | 9516908 | robwschlegel | 2021-03-19 | Added caption for Table 1 |
| Rmd | f118376 | robwschlegel | 2021-03-19 | Quick touch-ups |
| html | f118376 | robwschlegel | 2021-03-19 | Quick touch-ups |
| Rmd | fae1dc7 | robwschlegel | 2021-03-18 | Added the full table of drivers determined to be important for the EU Arctic |
| html | fae1dc7 | robwschlegel | 2021-03-18 | Added the full table of drivers determined to be important for the EU Arctic |
| Rmd | 8a2bf4b | robwschlegel | 2021-03-12 | Expanded the meta-database |
| html | 8a2bf4b | robwschlegel | 2021-03-12 | Expanded the meta-database |
| Rmd | 0a20683 | robwschlegel | 2021-03-11 | Updates mostly to Isfjorden section |
| html | 0a20683 | robwschlegel | 2021-03-11 | Updates mostly to Isfjorden section |
| Rmd | 17454eb | robwschlegel | 2021-03-08 | Added a couple of entries for Isfjorden |
| html | 17454eb | robwschlegel | 2021-03-08 | Added a couple of entries for Isfjorden |
| html | f8fbec0 | robwschlegel | 2021-03-08 | Build site. |
| Rmd | d4b695c | robwschlegel | 2021-03-08 | Re-built site. |
| Rmd | dc5dbf5 | robwschlegel | 2021-03-04 | Formatted all of the tables |
| html | dc5dbf5 | robwschlegel | 2021-03-04 | Formatted all of the tables |
| Rmd | 4a20757 | robwschlegel | 2021-03-04 | Added FACE-IT logo to top of each page |
| html | 4a20757 | robwschlegel | 2021-03-04 | Added FACE-IT logo to top of each page |
| Rmd | ddbd10d | robwschlegel | 2021-03-04 | Experimenting with popup rendering |
| html | ddbd10d | robwschlegel | 2021-03-04 | Experimenting with popup rendering |
| Rmd | c2e7863 | robwschlegel | 2021-03-04 | More HTML testing |
| html | c2e7863 | robwschlegel | 2021-03-04 | More HTML testing |
| Rmd | 49ebabd | robwschlegel | 2021-03-04 | Testing pop-ups and hyperlinks |
| html | 49ebabd | robwschlegel | 2021-03-04 | Testing pop-ups and hyperlinks |
| Rmd | c44e66f | robwschlegel | 2021-03-03 | Added a bit of text |
| html | c44e66f | robwschlegel | 2021-03-03 | Added a bit of text |
| html | 75d8f9b | robwschlegel | 2021-03-02 | Build site. |
| Rmd | f1c0ac2 | robwschlegel | 2021-03-02 | More spacing |
| html | f1c0ac2 | robwschlegel | 2021-03-02 | More spacing |
| html | 1765abd | robwschlegel | 2021-03-02 | Build site. |
| Rmd | 782169d | robwschlegel | 2021-03-02 | More playing around with widths and margins |
| html | 782169d | robwschlegel | 2021-03-02 | More playing around with widths and margins |
| html | 86624e0 | robwschlegel | 2021-03-02 | Build site. |
| Rmd | f853627 | robwschlegel | 2021-03-02 | Playing with page and table margins. |
| html | 8b80769 | robwschlegel | 2021-03-02 | Build site. |
| Rmd | 37be6e6 | robwschlegel | 2021-03-02 | Re-built site. |
| Rmd | a89dfa3 | robwschlegel | 2021-03-02 | Moving away from a single smart meta-data functions towards more user input |
| html | fbef3e0 | robwschlegel | 2021-03-01 | Build site. |
| Rmd | e020300 | robwschlegel | 2021-03-01 | Re-built site. |
| html | e8aab70 | robwschlegel | 2021-03-01 | Build site. |
| Rmd | f8ad72b | robwschlegel | 2021-03-01 | Re-built site. |
| Rmd | 665719d | robwschlegel | 2021-03-01 | Scraping convoluted date meta-data logic chain |
| Rmd | 21aed26 | robwschlegel | 2021-03-01 | Playing with meta-data function |
| html | 6c2110f | robwschlegel | 2021-03-01 | Build site. |
| Rmd | 5d4b15e | robwschlegel | 2021-03-01 | Re-built site. |
| html | 3a30630 | robwschlegel | 2021-03-01 | Build site. |
| Rmd | 9d46384 | robwschlegel | 2021-03-01 | Re-built site. |
| html | 3fd74f7 | robwschlegel | 2021-03-01 | Build site. |
| Rmd | 7d2db83 | robwschlegel | 2021-03-01 | Re-built site. |
| Rmd | 7ff8d63 | robwschlegel | 2021-03-01 | More work on metadatabase |
| html | 7ff8d63 | robwschlegel | 2021-03-01 | More work on metadatabase |
| html | 6b2f047 | robwschlegel | 2021-02-24 | Build site. |
| Rmd | 3e8114e | robwschlegel | 2021-02-24 | Re-built site. |
| Rmd | c38a8d3 | robwschlegel | 2021-02-19 | More minor changes |
| html | 9f9385e | robwschlegel | 2021-02-19 | Build site. |
| Rmd | 93d152e | robwschlegel | 2021-02-19 | Adjusting file pathways |
| html | 6208900 | robwschlegel | 2021-02-19 | Build site. |
| Rmd | b09fb3f | robwschlegel | 2021-02-19 | Re-built site. |
| html | 51741d5 | robwschlegel | 2021-02-19 | Build site. |
| Rmd | ca063d3 | robwschlegel | 2021-02-19 | Re-built site. |
| html | 849da96 | robwschlegel | 2021-02-19 | Build site. |
| Rmd | c5e635e | robwschlegel | 2021-02-19 | Re-built site. |
| html | ee3511e | robwschlegel | 2021-02-18 | Build site. |
| html | 04d996a | robwschlegel | 2021-02-18 | Build site. |
| html | c3a8a72 | robwschlegel | 2021-02-18 | Build site. |
| html | 3992686 | robwschlegel | 2021-02-18 | Build site. |
| Rmd | f9244d5 | Robert | 2021-02-17 | Re-built site. |
| Rmd | bd0919b | robwschlegel | 2021-02-16 | The metadatabase Rmd file |
Overview
This document is designed to satisfy D1.2 for the Horizon2020 project FACE-IT. The interactive tables contain the meta-database for the data files/products identified as key drivers of change in fjord and adjacent coastal socio-ecological systems of the seven FACE-IT study sites (D1.1). The data files/products identified within this document will be used for the completion of a review article on past and future changes of key drivers in and around the FACE-IT study sites (D1.3). The meta-database has been broken up into the different sites for convenience. The tables are organised in a hierarchical manner, meaning that their are tables for data across broad geographic regions if they would contain multiple sites. One may see below that the first section contains data that span the entire European Arctic as this is the broadest area of interest for FACE-IT. Within the EU Arctic there are also tables for data that span all of Svalbard and all of Greenland. Within these section are sub-sections for the individual sites. Note that because there is only one site in Norway (Porsangerfjorden), there can be no table for data spanning multiple Norwegian sites.
European Arctic
This section contains meta-data for pan-Arctic data files. These are almost exclusively large gridded data sets or large combined sets of CTD data.
Svalbard
While not a study site itself, there are a lot of studies and data products that focus on Svalbard broadly, rather than individual study sites within this region. Therefore this geographical region has it’s own meta-data table. The primary drivers of change for each site are still listed in their own tables below.
Kongsfjorden
Isfjorden
Inglefieldbukta
No data were found for Inglefieldbukta on any of the data portals identified in D1.1.
Greenland
See the EU Arctic figure above for where the Greenland sites are located. They are too spread out to be shown here in a single figure with any better precision than the full study area.
Please note that all GEM files must be downloaded directly from the URLs provided. Under the agreement between FACE-IT and GEM they are not to be hosted on the FACE-IT pCloud folder. This is primarily so that GEM can track the individual downloads of their files and for what purpose they were downloaded. This also requires that users of the data read a user agreement file.
Young Sound
Disko Bay
Nuup Kangerlua
Norway
Porsangerfjorden
References
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.3.4 DT_0.18 tidync_0.2.4 forcats_0.5.1
[5] stringr_1.4.0 dplyr_1.0.5 purrr_0.3.4 readr_1.4.0
[9] tidyr_1.1.3 tibble_3.1.1 ggplot2_3.3.3 tidyverse_1.3.1
[13] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.6 svglite_2.0.0 lubridate_1.7.10 assertthat_0.2.1
[5] rprojroot_2.0.2 digest_0.6.27 utf8_1.2.1 R6_2.5.0
[9] cellranger_1.1.0 backports_1.2.1 reprex_2.0.0 evaluate_0.14
[13] httr_1.4.2 pillar_1.6.0 rlang_0.4.10 readxl_1.3.1
[17] ncmeta_0.3.0 rstudioapi_0.13 whisker_0.4 rmarkdown_2.7
[21] webshot_0.5.2 htmlwidgets_1.5.3 munsell_0.5.0 broom_0.7.6
[25] compiler_4.0.3 httpuv_1.6.0 modelr_0.1.8 xfun_0.22
[29] systemfonts_1.0.1 pkgconfig_2.0.3 htmltools_0.5.1.1 tidyselect_1.1.0
[33] viridisLite_0.4.0 fansi_0.4.2 crayon_1.4.1 dbplyr_2.1.1
[37] withr_2.4.2 later_1.2.0 grid_4.0.3 jsonlite_1.7.2
[41] gtable_0.3.0 lifecycle_1.0.0 DBI_1.1.1 git2r_0.28.0
[45] magrittr_2.0.1 scales_1.1.1 ncdf4_1.17 cli_2.5.0
[49] stringi_1.5.3 fs_1.5.0 promises_1.2.0.1 xml2_1.3.2
[53] ellipsis_0.3.1 generics_0.1.0 vctrs_0.3.7 tools_4.0.3
[57] glue_1.4.2 RNetCDF_2.4-2 crosstalk_1.1.1 hms_1.0.0
[61] yaml_2.2.1 colorspace_2.0-0 rvest_1.0.0 knitr_1.33
[65] haven_2.4.1