• Overview
  • European Arctic
  • Svalbard
    • Kongsfjorden
    • Isfjorden
    • Inglefieldbukta
  • Greenland
    • Young Sound
    • Disko Bay
    • Nuup Kangerlua
  • Norway
    • Porsangerfjorden
  • References

Last updated: 2021-05-20

Checks: 7 0

Knit directory: WP1/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

The command set.seed(20210216) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 1727cf7. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Unstaged changes:
    Modified:   code/functions.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/metadatabase.Rmd) and HTML (docs/metadatabase.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 1727cf7 Robert 2021-05-20 Added GEM data to meta-database
html 1727cf7 Robert 2021-05-20 Added GEM data to meta-database
Rmd 43ea3c8 robwschlegel 2021-05-07 Updates to meta-database
html 43ea3c8 robwschlegel 2021-05-07 Updates to meta-database
Rmd 5743fa6 robwschlegel 2021-05-06 Starting in on GEM emta-data
Rmd 4fd116f Robert 2021-04-30 Database updates
html 4fd116f Robert 2021-04-30 Database updates
Rmd 6e4a07b robwschlegel 2021-04-28 Steps towards multi-core PANGAEA downloads and assemblies
Rmd c5de9e3 robwschlegel 2021-04-27 Different methods of saving PANGAEA data
html c5de9e3 robwschlegel 2021-04-27 Different methods of saving PANGAEA data
Rmd ed75738 robwschlegel 2021-04-27 Tidied up the meta-database before adding Pangae data
html ed75738 robwschlegel 2021-04-27 Tidied up the meta-database before adding Pangae data
Rmd 57a356a robwschlegel 2021-04-23 Update to meta-database intro text.
html 57a356a robwschlegel 2021-04-23 Update to meta-database intro text.
Rmd 1f276c2 robwschlegel 2021-04-23 More updates
html 05db53f robwschlegel 2021-04-23 Build site.
Rmd 68676ee robwschlegel 2021-04-23 Update to Porsangerfjorden meta-data
html 68676ee robwschlegel 2021-04-23 Update to Porsangerfjorden meta-data
Rmd b7b88df robwschlegel 2021-04-21 Update to meta-database
Rmd cff7e0f robwschlegel 2021-04-19 Updates to meta-database.
html cff7e0f robwschlegel 2021-04-19 Updates to meta-database.
Rmd 55836e3 robwschlegel 2021-04-16 Updates to Isfjorden meta-data
html 55836e3 robwschlegel 2021-04-16 Updates to Isfjorden meta-data
Rmd ea2c8e7 robwschlegel 2021-04-15 Update to meta-database
Rmd 2fea339 robwschlegel 2021-04-15 Updates to meta-database page
html 2fea339 robwschlegel 2021-04-15 Updates to meta-database page
Rmd d63e05c robwschlegel 2021-04-15 Meta-data updates from Pedro
Rmd 3a43b49 robwschlegel 2021-04-13 Fix a few internal links
html 3a43b49 robwschlegel 2021-04-13 Fix a few internal links
Rmd 80c27b6 robwschlegel 2021-04-13 Rearranged the key drivers table
html 80c27b6 robwschlegel 2021-04-13 Rearranged the key drivers table
html 82c5970 robwschlegel 2021-04-13 Troubleshooting GitHub pages
html 90f6ec9 robwschlegel 2021-04-13 Build site.
Rmd 18c0f2e robwschlegel 2021-04-13 Update to meta-databse
html 7e3f348 robwschlegel 2021-04-13 Build site.
Rmd 19eac79 robwschlegel 2021-04-13 Re-built site.
html 0b7ee0f robwschlegel 2021-04-13 Build site.
Rmd 54ed685 robwschlegel 2021-04-01 Added a couple more meta-data sources.
html 7582d79 robwschlegel 2021-03-26 Build site.
html b1c8cca robwschlegel 2021-03-26 Build site.
Rmd a6fe134 robwschlegel 2021-03-26 Re-built site.
Rmd 65d120e robwschlegel 2021-03-24 Some notes
Rmd 9516908 robwschlegel 2021-03-19 Added caption for Table 1
html 9516908 robwschlegel 2021-03-19 Added caption for Table 1
Rmd f118376 robwschlegel 2021-03-19 Quick touch-ups
html f118376 robwschlegel 2021-03-19 Quick touch-ups
Rmd fae1dc7 robwschlegel 2021-03-18 Added the full table of drivers determined to be important for the EU Arctic
html fae1dc7 robwschlegel 2021-03-18 Added the full table of drivers determined to be important for the EU Arctic
Rmd 8a2bf4b robwschlegel 2021-03-12 Expanded the meta-database
html 8a2bf4b robwschlegel 2021-03-12 Expanded the meta-database
Rmd 0a20683 robwschlegel 2021-03-11 Updates mostly to Isfjorden section
html 0a20683 robwschlegel 2021-03-11 Updates mostly to Isfjorden section
Rmd 17454eb robwschlegel 2021-03-08 Added a couple of entries for Isfjorden
html 17454eb robwschlegel 2021-03-08 Added a couple of entries for Isfjorden
html f8fbec0 robwschlegel 2021-03-08 Build site.
Rmd d4b695c robwschlegel 2021-03-08 Re-built site.
Rmd dc5dbf5 robwschlegel 2021-03-04 Formatted all of the tables
html dc5dbf5 robwschlegel 2021-03-04 Formatted all of the tables
Rmd 4a20757 robwschlegel 2021-03-04 Added FACE-IT logo to top of each page
html 4a20757 robwschlegel 2021-03-04 Added FACE-IT logo to top of each page
Rmd ddbd10d robwschlegel 2021-03-04 Experimenting with popup rendering
html ddbd10d robwschlegel 2021-03-04 Experimenting with popup rendering
Rmd c2e7863 robwschlegel 2021-03-04 More HTML testing
html c2e7863 robwschlegel 2021-03-04 More HTML testing
Rmd 49ebabd robwschlegel 2021-03-04 Testing pop-ups and hyperlinks
html 49ebabd robwschlegel 2021-03-04 Testing pop-ups and hyperlinks
Rmd c44e66f robwschlegel 2021-03-03 Added a bit of text
html c44e66f robwschlegel 2021-03-03 Added a bit of text
html 75d8f9b robwschlegel 2021-03-02 Build site.
Rmd f1c0ac2 robwschlegel 2021-03-02 More spacing
html f1c0ac2 robwschlegel 2021-03-02 More spacing
html 1765abd robwschlegel 2021-03-02 Build site.
Rmd 782169d robwschlegel 2021-03-02 More playing around with widths and margins
html 782169d robwschlegel 2021-03-02 More playing around with widths and margins
html 86624e0 robwschlegel 2021-03-02 Build site.
Rmd f853627 robwschlegel 2021-03-02 Playing with page and table margins.
html 8b80769 robwschlegel 2021-03-02 Build site.
Rmd 37be6e6 robwschlegel 2021-03-02 Re-built site.
Rmd a89dfa3 robwschlegel 2021-03-02 Moving away from a single smart meta-data functions towards more user input
html fbef3e0 robwschlegel 2021-03-01 Build site.
Rmd e020300 robwschlegel 2021-03-01 Re-built site.
html e8aab70 robwschlegel 2021-03-01 Build site.
Rmd f8ad72b robwschlegel 2021-03-01 Re-built site.
Rmd 665719d robwschlegel 2021-03-01 Scraping convoluted date meta-data logic chain
Rmd 21aed26 robwschlegel 2021-03-01 Playing with meta-data function
html 6c2110f robwschlegel 2021-03-01 Build site.
Rmd 5d4b15e robwschlegel 2021-03-01 Re-built site.
html 3a30630 robwschlegel 2021-03-01 Build site.
Rmd 9d46384 robwschlegel 2021-03-01 Re-built site.
html 3fd74f7 robwschlegel 2021-03-01 Build site.
Rmd 7d2db83 robwschlegel 2021-03-01 Re-built site.
Rmd 7ff8d63 robwschlegel 2021-03-01 More work on metadatabase
html 7ff8d63 robwschlegel 2021-03-01 More work on metadatabase
html 6b2f047 robwschlegel 2021-02-24 Build site.
Rmd 3e8114e robwschlegel 2021-02-24 Re-built site.
Rmd c38a8d3 robwschlegel 2021-02-19 More minor changes
html 9f9385e robwschlegel 2021-02-19 Build site.
Rmd 93d152e robwschlegel 2021-02-19 Adjusting file pathways
html 6208900 robwschlegel 2021-02-19 Build site.
Rmd b09fb3f robwschlegel 2021-02-19 Re-built site.
html 51741d5 robwschlegel 2021-02-19 Build site.
Rmd ca063d3 robwschlegel 2021-02-19 Re-built site.
html 849da96 robwschlegel 2021-02-19 Build site.
Rmd c5e635e robwschlegel 2021-02-19 Re-built site.
html ee3511e robwschlegel 2021-02-18 Build site.
html 04d996a robwschlegel 2021-02-18 Build site.
html c3a8a72 robwschlegel 2021-02-18 Build site.
html 3992686 robwschlegel 2021-02-18 Build site.
Rmd f9244d5 Robert 2021-02-17 Re-built site.
Rmd bd0919b robwschlegel 2021-02-16 The metadatabase Rmd file

Overview

This document is designed to satisfy D1.2 for the Horizon2020 project FACE-IT. The interactive tables contain the meta-database for the data files/products identified as key drivers of change in fjord and adjacent coastal socio-ecological systems of the seven FACE-IT study sites (D1.1). The data files/products identified within this document will be used for the completion of a review article on past and future changes of key drivers in and around the FACE-IT study sites (D1.3). The meta-database has been broken up into the different sites for convenience. The tables are organised in a hierarchical manner, meaning that their are tables for data across broad geographic regions if they would contain multiple sites. One may see below that the first section contains data that span the entire European Arctic as this is the broadest area of interest for FACE-IT. Within the EU Arctic there are also tables for data that span all of Svalbard and all of Greenland. Within these section are sub-sections for the individual sites. Note that because there is only one site in Norway (Porsangerfjorden), there can be no table for data spanning multiple Norwegian sites.

European Arctic

This section contains meta-data for pan-Arctic data files. These are almost exclusively large gridded data sets or large combined sets of CTD data.

Svalbard

While not a study site itself, there are a lot of studies and data products that focus on Svalbard broadly, rather than individual study sites within this region. Therefore this geographical region has it’s own meta-data table. The primary drivers of change for each site are still listed in their own tables below.

Kongsfjorden

Isfjorden

Inglefieldbukta

No data were found for Inglefieldbukta on any of the data portals identified in D1.1.

Greenland

See the EU Arctic figure above for where the Greenland sites are located. They are too spread out to be shown here in a single figure with any better precision than the full study area.

Please note that all GEM files must be downloaded directly from the URLs provided. Under the agreement between FACE-IT and GEM they are not to be hosted on the FACE-IT pCloud folder. This is primarily so that GEM can track the individual downloads of their files and for what purpose they were downloaded. This also requires that users of the data read a user agreement file.

Young Sound

Disko Bay

Nuup Kangerlua

Norway

Porsangerfjorden

References


R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] kableExtra_1.3.4 DT_0.18          tidync_0.2.4     forcats_0.5.1   
 [5] stringr_1.4.0    dplyr_1.0.5      purrr_0.3.4      readr_1.4.0     
 [9] tidyr_1.1.3      tibble_3.1.1     ggplot2_3.3.3    tidyverse_1.3.1 
[13] workflowr_1.6.2 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.6        svglite_2.0.0     lubridate_1.7.10  assertthat_0.2.1 
 [5] rprojroot_2.0.2   digest_0.6.27     utf8_1.2.1        R6_2.5.0         
 [9] cellranger_1.1.0  backports_1.2.1   reprex_2.0.0      evaluate_0.14    
[13] httr_1.4.2        pillar_1.6.0      rlang_0.4.10      readxl_1.3.1     
[17] ncmeta_0.3.0      rstudioapi_0.13   whisker_0.4       rmarkdown_2.7    
[21] webshot_0.5.2     htmlwidgets_1.5.3 munsell_0.5.0     broom_0.7.6      
[25] compiler_4.0.3    httpuv_1.6.0      modelr_0.1.8      xfun_0.22        
[29] systemfonts_1.0.1 pkgconfig_2.0.3   htmltools_0.5.1.1 tidyselect_1.1.0 
[33] viridisLite_0.4.0 fansi_0.4.2       crayon_1.4.1      dbplyr_2.1.1     
[37] withr_2.4.2       later_1.2.0       grid_4.0.3        jsonlite_1.7.2   
[41] gtable_0.3.0      lifecycle_1.0.0   DBI_1.1.1         git2r_0.28.0     
[45] magrittr_2.0.1    scales_1.1.1      ncdf4_1.17        cli_2.5.0        
[49] stringi_1.5.3     fs_1.5.0          promises_1.2.0.1  xml2_1.3.2       
[53] ellipsis_0.3.1    generics_0.1.0    vctrs_0.3.7       tools_4.0.3      
[57] glue_1.4.2        RNetCDF_2.4-2     crosstalk_1.1.1   hms_1.0.0        
[61] yaml_2.2.1        colorspace_2.0-0  rvest_1.0.0       knitr_1.33       
[65] haven_2.4.1