Last updated: 2021-07-19

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Knit directory: emlr_mod_v_XXX/

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1 Required data

Required are:

  • Synthetic cmorized model subsetting data based on preprocessed GLODAP data
    • cleaned data file
  • Cmorized annual cant field for three reference year
  • Cmorized annual mean atmospheric pCO2
if (params_local$subsetting == "GLODAP") {
  
GLODAP <-
  read_csv(paste(
    path_version_data,
    "GLODAPv2.2020_clean_GLODAP.csv",
    sep = ""
  ))

}

if (params_local$subsetting == "random") {
  
GLODAP <-
  read_csv(paste(
    path_version_data,
    "GLODAPv2.2020_clean_random.csv",
    sep = ""
  ))

}

2 Calculation of tref

Calculate the reference year for each era and store it as csv file for further selection of corresponding Cant fields.

# calculate reference year
tref <- GLODAP %>%
  group_by(era) %>%
  summarise(year = round(median(year))) %>%
  ungroup()

# whether manually change the tref year
if (params_local$median_tref == "n") {
  
  tref$year[2] <- 2006
  tref$year[3] <- 2014

}

# write file
tref  %>%  write_csv(paste(path_version_data,
                           "tref.csv",
                           sep = ""))
cant_tref_1 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[1]),
    ".csv",
    sep = ""
  ))

cant_tref_2 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[2]),
    ".csv",
    sep = ""
  ))

cant_tref_3 <-
  read_csv(paste(
    path_preprocessing,
    "cant_annual_field_", params_local$model_runs, "/cant_",
    unique(tref$year[3]),
    ".csv",
    sep = ""
  ))

co2_atm <-
  read_csv(paste(path_preprocessing,
                 "co2_atm.csv",
                 sep = ""))

3 PO4*

3.1 Calculation

The predictor PO4* was be calculated according to Clement and Gruber (2018), ie based on oxygen. Please note that an erroneous equations for PO4* calculation is given in the supplement of Gruber et al (2019), based on nitrate.

Here we use following equation:

if ("phosphate" %in% params_local$MLR_predictors) {
  print(b_phosphate_star)
  
  if ("phosphate_star" %in% params_local$MLR_predictors) {
    GLODAP <- GLODAP %>%
      mutate(phosphate_star = b_phosphate_star(phosphate, oxygen))
  }
  
}
function (phosphate, oxygen) 
{
    phosphate_star = phosphate + (oxygen/params_local$rPO) - 
        params_local$rPO_offset
    return(phosphate_star)
}

4 SiO3*

4.1 Calculation

The predictor SiO3* was be calculated according to Sarmiento et al. (2004), ie based on silicate and nitrate.

Here we use following equation:

print(b_silicate_star)
function (silicate, nitrate) 
{
    silicate_star = silicate - nitrate
    return(silicate_star)
}
if ("silicate_star" %in% params_local$MLR_predictors) {
GLODAP <- GLODAP %>% 
  mutate(silicate_star = b_silicate_star(silicate, nitrate))
}

5 C*

C* serves as a conservative tracer of anthropogenic CO2 uptake. It is derived from synthetic subsetted DIC by removing the impact of

  • organic matter formation and respiration
  • calcification and calcium carbonate dissolution

Contributions of those processes are estimated from phosphate and alkalinity concentrations.

5.1 Stoichiometric ratios

The stoichiometric nutrient ratios for the production and mineralization of organic matter were set to:

  • C/P: 117
  • N/P: 16

5.2 Calculation

C* was calculated as:

print(b_cstar)
function (tco2, phosphate, talk) 
{
    cstar = tco2 - (params_local$rCP * phosphate) - 0.5 * (talk - 
        (params_local$rNP * phosphate))
    return(cstar)
}
if ("phosphate" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    mutate(
      rCP_phosphate = -params_local$rCP * phosphate,
      talk_05 = -0.5 * talk,
      rNP_phosphate_05 = -0.5 * params_local$rNP * phosphate,
      cstar = b_cstar(tco2, phosphate, talk)
    )
  
} else {
  GLODAP <- GLODAP %>%
    mutate(
      rCP_phosphate = -params_local$rCP * nitrate,
      talk_05 = -0.5 * talk,
      rNP_phosphate_05 = -0.5 * params_local$rNP * nitrate,
      cstar = b_cstar(tco2, nitrate, talk)
    )
  
}

5.3 Reference year adjustment

To adjust C* values to the reference year of each observation period, we assume a transient steady state change of cant between the time of model subsetting and the reference year. The adjustment requires an approximation of the cant concentration at the reference year. We here use the model-estimated annual cant field for each reference year.

5.3.1 Cant at tref

Read in Cant field for each reference year.

# print reference year table
kable(tref) %>%
  add_header_above() %>%
  kable_styling()
era year
1982-1999 1994
2000-2009 2005
2010-2019 2014
# join cant with tref
cant_3d <- bind_rows(cant_tref_1, cant_tref_2, cant_tref_3)

cant_3d <- left_join(cant_3d, tref) %>%
  arrange(lon, lat, depth) %>% 
  select(lon, lat, depth, era, cant_total)

rm(cant_tref_1, cant_tref_2, cant_tref_3)
map +
  geom_raster(data = cant_3d %>% filter(depth == min(depth)),
              aes(lon, lat, fill = cant_total)) +
  facet_wrap(~ era, ncol = 1) +
  scale_fill_viridis_c() +
  labs(title = "Surface total Cant concentration")

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c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
fa85b93 jens-daniel-mueller 2021-01-06

5.3.2 Combine GLODAP + Cant

# observations grid per era
GLODAP_obs_grid_era <- GLODAP %>% 
  distinct(lat, lon, era)

# cant data at observations grid
cant_3d_obs <- left_join(
  GLODAP_obs_grid_era,
  cant_3d)

# calculate number of cant data points per grid cell
cant_3d_obs <- cant_3d_obs %>%
  group_by(lon, lat, era) %>% 
  mutate(n = n()) %>% 
  ungroup()

# GLODAP-based model subset with only one Cant value
map +
  geom_bin2d(data = cant_3d_obs,
             aes(lon, lat),
             binwidth = 1) +
  scale_fill_viridis_c() +
  facet_wrap(~ era, ncol = 1) +
  labs(title = "Number of Cant depth levels",
       subtitle = "available per latxlon grid cell")

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
5e0bd64 Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
b883157 Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
rm(cant_3d, GLODAP_obs_grid_era)

GLODAP_cant_obs <- full_join(GLODAP, cant_3d_obs)

rm(GLODAP, cant_3d_obs)

# fill number of cant data points per grid cell to all model subsetting
GLODAP_cant_obs <- GLODAP_cant_obs %>%
  group_by(lon, lat, era) %>% 
  fill(n, .direction = "updown") %>% 
  ungroup()

The model-estimated annual cant fields were merged with GLODAP-based synthetic cmorized model subsetting by:

  • using an identical 1x1° horizontal grid
  • linear interpolation of Cant from standard to subsetting depth
# define positive cant values
GLODAP_cant_obs <- GLODAP_cant_obs %>%
  mutate(cant_total_pos = if_else(cant_total < 0, 0, cant_total))

# interpolate cant to subsetting depth
GLODAP_cant_obs_int <- GLODAP_cant_obs %>%
  filter(n > 1) %>% 
  group_by(lat, lon, era) %>%
  arrange(depth) %>%
  mutate(cant_int = approxfun(depth, cant_total_pos, rule = 2)(depth)) %>%
  ungroup()

# set cant for subsetting depth if only one cant available
#GLODAP_cant_obs_set <- GLODAP_cant_obs %>%
#  filter(n == 1) %>%
#  group_by(lat, lon, era) %>%
#  mutate(cant_int = mean(cant_total, na.rm = TRUE)) %>%
#  ungroup()

### bin data sets with interpolated and set cant
GLODAP_cant_obs <- GLODAP_cant_obs_int
rm(GLODAP_cant_obs_int)

if (params_local$subsetting == "GLODAP") {
  ggplot() +
    geom_path(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, date == ymd("2018-06-27")),
      aes(cant_int, depth, col = "interpolated")
    ) +
    scale_y_reverse() +
    facet_wrap( ~ era) +
    scale_color_brewer(palette = "Dark2", name = "") +
    labs(title = "Cant interpolation to subsetting depth - example profile")
  
}

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
7cdea0c jens-daniel-mueller 2021-01-06
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
if (params_local$subsetting == "random") {
  ggplot() +
    geom_path(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
        filter(lat == 48.5, lon == 165.5, !is.na(cant_total)) %>%
        arrange(depth),
      aes(cant_total, depth, col = "mapped")
    ) +
    geom_point(
      data = GLODAP_cant_obs %>%
      # filter(lat == 48.5, lon == 165.5, month == 6),
        filter(lat == 48.5, lon == 165.5),
      aes(cant_int, depth, col = "interpolated")
    ) +
    scale_y_reverse() +
    facet_wrap( ~ era) +
    scale_color_brewer(palette = "Dark2", name = "") +
    labs(title = "Cant interpolation to subsetting depth - example profile")
  
}

# remove cant data at grid cells without observations
GLODAP <- GLODAP_cant_obs %>%
  filter(!is.na(cstar)) %>%
  mutate(cant_total_pos = cant_int) %>%
  select(-c(cant_int, cant_total, n))

rm(GLODAP_cant_obs)

5.3.3 Merge GLODAP + atm. pCO2

GLODAP-based subsetting were merged with mean annual atmospheric pCO2 levels by year.

GLODAP <- left_join(GLODAP, co2_atm)

5.3.4 Calculation

# assign reference year
GLODAP <- GLODAP %>% 
  group_by(era) %>% 
  mutate(tref = median(year)) %>% 
  ungroup()

# extract atm pCO2 at reference year
co2_atm_tref <- right_join(co2_atm, tref) %>% 
  select(-year) %>% 
  rename(pCO2_tref = pCO2)

# merge atm pCO2 at tref with GLODAP
GLODAP <- full_join(GLODAP, co2_atm_tref)
rm(co2_atm, tref)

# calculate cstar for reference year
GLODAP <- GLODAP %>%
  mutate(
    cstar_tref_delta =
      ((pCO2 - pCO2_tref) / (pCO2_tref - params_local$preind_atm_pCO2)) * cant_total_pos,
    cstar_tref = cstar - cstar_tref_delta)

5.4 Control plots

GLODAP %>% 
  ggplot(aes(cstar_tref_delta)) +
  geom_histogram(binwidth = 1) +
  labs(title = "Histogramm with binwidth = 1")

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
7cdea0c jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
GLODAP %>% 
  sample_n(1e4) %>% 
  ggplot(aes(year, cstar_tref_delta, col = cant_total_pos)) +
  geom_point() +
  scale_color_viridis_c() +
  labs(title = "Time series of random subsample 1e4")

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
a076226 Donghe-Zhu 2021-01-11
7cdea0c jens-daniel-mueller 2021-01-06
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
GLODAP %>% 
  ggplot(aes(year, cstar_tref_delta)) +
  geom_bin2d(binwidth = 1) +
  scale_fill_viridis_c(trans = "log10") +
  labs(title = "Heatmap with binwidth = 1")

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
7cdea0c jens-daniel-mueller 2021-01-06
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

6 Selected section plots

A selected section is plotted to demonstrate the magnitude of various parameters and corrections relevant to C*.

if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>%
    filter(lon %in% params_global$lon_Atl_section)
  
}
if (params_local$subsetting == "GLODAP") {
  map +
    geom_path(data = GLODAP_cruise %>%
                arrange(date),
              aes(lon, lat)) +
    geom_point(data = GLODAP_cruise %>%
                 arrange(date),
               aes(lon, lat, col = date)) +
    scale_color_viridis_c(trans = "date") +
    labs(title = paste("Cruise year:", mean(GLODAP_cruise$year)))
}

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
5e0bd64 Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
b883157 Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
c8b76b3 jens-daniel-mueller 2020-12-19
if (params_local$subsetting == "random") {
  map +
    geom_path(data = GLODAP_cruise,
              aes(lon, lat)) +
    geom_point(data = GLODAP_cruise,
               aes(lon, lat)) +
    scale_color_viridis_c(trans = "date") +
    labs(title = paste("Cruise year:", mean(GLODAP_cruise$year)))
  
}

lat_section <-
  GLODAP_cruise %>%
  ggplot(aes(lat, depth)) +
  scale_y_reverse() +
  scale_fill_viridis_c() +
  theme(axis.title.x = element_blank())

for (i_var in c("tco2",
                "rCP_phosphate",
                "talk_05",
                "rNP_phosphate_05",
                "cstar",
                "cstar_tref")) {
  print(lat_section +
          stat_summary_2d(aes(z = !!sym(i_var))) +
          scale_fill_viridis_c(name = i_var)
        )
  
}

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
e5cb81a Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
7cdea0c jens-daniel-mueller 2021-01-06
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
rm(lat_section, GLODAP_cruise)

7 Isoneutral slabs

The following boundaries for isoneutral slabs were defined:

  • Atlantic: -, 26, 26.5, 26.75, 27, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1, 28.15, 28.2,
  • Indo-Pacific: -, 26, 26.5, 26.75, 27, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1, 28.2, 28.3,

Continuous neutral densities (gamma) values from model subsetting are grouped into isoneutral slabs.

GLODAP <- m_cut_gamma(GLODAP, "gamma")
if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>% 
  filter(lon %in% params_global$lon_Atl_section)
  
}

lat_section <- 
GLODAP_cruise %>%
  ggplot(aes(lat, depth)) +
  scale_y_reverse() +
  theme(legend.position = "bottom")

lat_section +
  geom_point(aes(col = gamma_slab)) +
  scale_color_viridis_d()

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
2e6976b Donghe-Zhu 2021-03-21
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
5365f80 Donghe-Zhu 2021-03-10
2b6c392 Donghe-Zhu 2021-03-10
9f58753 Donghe-Zhu 2021-03-10
112dea0 Donghe-Zhu 2021-03-08
1843412 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
ffda45a Donghe-Zhu 2021-03-03
691ba81 Donghe-Zhu 2021-03-03
c5e45a2 Donghe-Zhu 2021-03-03
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
61efb56 Donghe-Zhu 2021-01-25
c569946 Donghe-Zhu 2021-01-24
a2f0d56 Donghe-Zhu 2021-01-23
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
17dee1d jens-daniel-mueller 2021-01-13
e5cb81a Donghe-Zhu 2021-01-05
c8b76b3 jens-daniel-mueller 2020-12-19
rm(lat_section, GLODAP_cruise)
# this section was only used to calculate gamma locally, and compare it to the value provided in GLODAP data set
if (params_local$subsetting == "GLODAP") {

GLODAP_cruise <- GLODAP %>% 
  filter(cruise %in% params_global$cruises_meridional)

}

if (params_local$subsetting == "random") {
  
  GLODAP_cruise <- GLODAP %>% 
  filter(lon %in% params_global$lon_Atl_section)
  
}

library(oce)
library(gsw)
# calculate pressure from depth

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(CTDPRS = gsw_p_from_z(-depth,
                               lat))

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(THETA = swTheta(salinity = sal,
                         temperature = temp,
                         pressure = CTDPRS,
                         referencePressure = 0,
                         longitude = lon-180,
                         latitude = lat))

GLODAP_cruise <- GLODAP_cruise %>% 
  rename(LATITUDE = lat,
         LONGITUDE = lon,
         SALNTY = sal,
         gamma_provided = gamma)

library(reticulate)
source_python(
  paste(
    path_root,
    "/utilities/functions/python_scripts/",
    "Gamma_GLODAP_python.py",
    sep = ""
  )
)

GLODAP_cruise <- calculate_gamma(GLODAP_cruise)

GLODAP_cruise <- GLODAP_cruise %>% 
  mutate(gamma_delta = gamma_provided - GAMMA)

lat_section <- 
GLODAP_cruise %>%
  ggplot(aes(LATITUDE, CTDPRS)) +
  scale_y_reverse() +
  theme(legend.position = "bottom")

lat_section +
  stat_summary_2d(aes(z = gamma_delta)) +
  scale_color_viridis_c()

GLODAP_cruise %>% 
  ggplot(aes(gamma_delta))+
  geom_histogram()

rm(lat_section, GLODAP_cruise, cruises_meridional)

8 Synthetic data coverage

GLODAP <- GLODAP %>% 
  mutate(gamma_slab = factor(gamma_slab), 
         gamma_slab = factor(gamma_slab, levels = rev(levels(gamma_slab))))

for (i_basin in unique(GLODAP$basin)) {
  # i_basin <- unique(GLODAP$basin)[3]
  
  print(
    GLODAP %>%
      filter(basin == i_basin) %>%
      ggplot(aes(lat, gamma_slab)) +
      geom_bin2d(binwidth = 5) +
      scale_fill_viridis_c(
        option = "magma",
        direction = -1,
        trans = "log10"
      ) +
      scale_x_continuous(breaks = seq(-100, 100, 20),
                         limits = c(params_global$lat_min,
                                    params_global$lat_max)) +
      facet_grid(era ~ .) +
      labs(title = paste("MLR region: ", i_basin))
  )
  
}

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
d44db8e Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
a482a6b Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
90a9da5 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
e7a5266 Donghe-Zhu 2021-06-24
7c57720 Donghe-Zhu 2021-06-24
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
256a616 Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
d20c383 Donghe-Zhu 2021-06-18
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
25dda1d Donghe-Zhu 2021-06-08
bd2bcc3 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
7ae0d4b Donghe-Zhu 2021-06-07
325391f Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
75dda4d Donghe-Zhu 2021-03-27
0b19f6e Donghe-Zhu 2021-03-27
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
b883157 Donghe-Zhu 2021-03-27
1914a11 Donghe-Zhu 2021-03-24
bf19764 Donghe-Zhu 2021-03-22
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
5365f80 Donghe-Zhu 2021-03-10
2b6c392 Donghe-Zhu 2021-03-10
9f58753 Donghe-Zhu 2021-03-10
cc2a956 Donghe-Zhu 2021-03-10
02f7242 Donghe-Zhu 2021-03-09
1691156 Donghe-Zhu 2021-03-08
c0ceaf8 Donghe-Zhu 2021-03-08
112dea0 Donghe-Zhu 2021-03-08
1843412 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
627c8fb Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
ffda45a Donghe-Zhu 2021-03-03
691ba81 Donghe-Zhu 2021-03-03
c5e45a2 Donghe-Zhu 2021-03-03
19edd1e Donghe-Zhu 2021-02-27
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
57f701e Donghe-Zhu 2021-02-24
06f3149 Donghe-Zhu 2021-02-16
4469a0c Donghe-Zhu 2021-02-13
5ae6a69 Donghe-Zhu 2021-02-10
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
1fad5f1 Donghe-Zhu 2021-02-07
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
59e006e Donghe-Zhu 2021-01-31
a1c8f87 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
ceed31b Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
61efb56 Donghe-Zhu 2021-01-25
48f638e Donghe-Zhu 2021-01-25
c569946 Donghe-Zhu 2021-01-24
a2f0d56 Donghe-Zhu 2021-01-23
28509fc Donghe-Zhu 2021-01-23
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
17dee1d jens-daniel-mueller 2021-01-13
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
d44db8e Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
a482a6b Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
90a9da5 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
e7a5266 Donghe-Zhu 2021-06-24
7c57720 Donghe-Zhu 2021-06-24
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
256a616 Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
d20c383 Donghe-Zhu 2021-06-18
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
25dda1d Donghe-Zhu 2021-06-08
bd2bcc3 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
7ae0d4b Donghe-Zhu 2021-06-07
325391f Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
75dda4d Donghe-Zhu 2021-03-27
0b19f6e Donghe-Zhu 2021-03-27
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
b883157 Donghe-Zhu 2021-03-27
1914a11 Donghe-Zhu 2021-03-24
bf19764 Donghe-Zhu 2021-03-22
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
5365f80 Donghe-Zhu 2021-03-10
2b6c392 Donghe-Zhu 2021-03-10
9f58753 Donghe-Zhu 2021-03-10
cc2a956 Donghe-Zhu 2021-03-10
02f7242 Donghe-Zhu 2021-03-09
1691156 Donghe-Zhu 2021-03-08
c0ceaf8 Donghe-Zhu 2021-03-08
058e0a1 Donghe-Zhu 2021-03-08
112dea0 Donghe-Zhu 2021-03-08
1843412 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
627c8fb Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
691ba81 Donghe-Zhu 2021-03-03
c5e45a2 Donghe-Zhu 2021-03-03
19edd1e Donghe-Zhu 2021-02-27
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
57f701e Donghe-Zhu 2021-02-24
06f3149 Donghe-Zhu 2021-02-16
4469a0c Donghe-Zhu 2021-02-13
5ae6a69 Donghe-Zhu 2021-02-10
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
1fad5f1 Donghe-Zhu 2021-02-07
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
59e006e Donghe-Zhu 2021-01-31
a1c8f87 Donghe-Zhu 2021-01-31
ae5c18f Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
ceed31b Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
61efb56 Donghe-Zhu 2021-01-25
48f638e Donghe-Zhu 2021-01-25
c569946 Donghe-Zhu 2021-01-24
a2f0d56 Donghe-Zhu 2021-01-23
28509fc Donghe-Zhu 2021-01-23
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
17dee1d jens-daniel-mueller 2021-01-13
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19

8.1 Histograms

GLODAP_vars <- GLODAP %>% 
  select(params_local$MLR_target,
         params_local$MLR_predictors)

GLODAP_vars_long <- GLODAP_vars %>% 
  pivot_longer(
    cols = c(params_local$MLR_target,
             params_local$MLR_predictors),
    names_to = "variable",
    values_to = "value"
  )

GLODAP_vars_long %>% 
  ggplot(aes(value)) +
  geom_histogram() +
  facet_wrap(~ variable,
             ncol = 2,
             scales = "free")

Version Author Date
ff0575d Donghe-Zhu 2021-07-19
5d60eac Donghe-Zhu 2021-07-19
57d0420 Donghe-Zhu 2021-07-16
c1be8f6 Donghe-Zhu 2021-07-16
26a7c15 Donghe-Zhu 2021-07-16
046902b Donghe-Zhu 2021-07-16
3d4ac14 Donghe-Zhu 2021-07-15
be6fff9 Donghe-Zhu 2021-07-15
b473472 Donghe-Zhu 2021-07-15
363270a Donghe-Zhu 2021-07-15
8b75a03 Donghe-Zhu 2021-07-15
a01e135 Donghe-Zhu 2021-07-07
bc83ef2 Donghe-Zhu 2021-07-07
75e7b07 Donghe-Zhu 2021-07-06
697aa6d Donghe-Zhu 2021-07-06
d52e2de Donghe-Zhu 2021-07-06
f2bde6b Donghe-Zhu 2021-07-06
1133f28 Donghe-Zhu 2021-07-06
fe3a1cd Donghe-Zhu 2021-07-06
d9cdf15 Donghe-Zhu 2021-07-06
ee4cd2d Donghe-Zhu 2021-07-06
93821c1 Donghe-Zhu 2021-07-05
20b3436 Donghe-Zhu 2021-07-05
d982ea5 Donghe-Zhu 2021-07-05
7397e53 Donghe-Zhu 2021-07-05
f2e4805 Donghe-Zhu 2021-07-05
e2d011a Donghe-Zhu 2021-07-05
85e0349 Donghe-Zhu 2021-07-05
6ee0146 Donghe-Zhu 2021-07-05
f59f1b3 Donghe-Zhu 2021-07-05
116bcab Donghe-Zhu 2021-07-04
cb1c8dc Donghe-Zhu 2021-07-04
c9bdd83 Donghe-Zhu 2021-07-04
1920ad9 Donghe-Zhu 2021-07-04
0b02791 Donghe-Zhu 2021-06-25
caf62d8 Donghe-Zhu 2021-06-25
bb413c8 Donghe-Zhu 2021-06-25
b5b95a9 Donghe-Zhu 2021-06-24
472aad4 Donghe-Zhu 2021-06-24
d517836 Donghe-Zhu 2021-06-24
9221bfe Donghe-Zhu 2021-06-24
bff5fbf Donghe-Zhu 2021-06-23
00072e2 Donghe-Zhu 2021-06-23
7431530 Donghe-Zhu 2021-06-20
b0874a2 Donghe-Zhu 2021-06-17
72c2f2e Donghe-Zhu 2021-06-15
d97dcb6 Donghe-Zhu 2021-06-08
e9b27d7 Donghe-Zhu 2021-06-07
ed89970 Donghe-Zhu 2021-06-07
df37958 Donghe-Zhu 2021-06-07
812bf63 Donghe-Zhu 2021-06-06
65c89c8 Donghe-Zhu 2021-06-06
9baa3b2 Donghe-Zhu 2021-06-06
b7d99cf Donghe-Zhu 2021-06-06
5d8fa90 Donghe-Zhu 2021-06-06
dbe2a95 Donghe-Zhu 2021-05-28
d50b039 Donghe-Zhu 2021-05-28
441ebe5 Donghe-Zhu 2021-05-28
6262ad3 Donghe-Zhu 2021-05-28
a61aa77 Donghe-Zhu 2021-05-28
b8dbce4 Donghe-Zhu 2021-05-28
94a833e Donghe-Zhu 2021-05-27
5e0bd64 Donghe-Zhu 2021-05-27
af1eadd Donghe-Zhu 2021-05-27
9179bfe Donghe-Zhu 2021-05-27
28cbe5e Donghe-Zhu 2021-05-27
a618f02 Donghe-Zhu 2021-05-27
4623e38 Donghe-Zhu 2021-05-27
b81bb49 Donghe-Zhu 2021-05-27
951e188 Donghe-Zhu 2021-05-27
e377833 Donghe-Zhu 2021-05-26
2705a04 Donghe-Zhu 2021-03-28
cd5f759 Donghe-Zhu 2021-03-28
e2704ca Donghe-Zhu 2021-03-27
3061a0b Donghe-Zhu 2021-03-27
d19654d Donghe-Zhu 2021-03-26
1914a11 Donghe-Zhu 2021-03-24
8be810e Donghe-Zhu 2021-03-23
3ec9d3d Donghe-Zhu 2021-03-22
134ace1 Donghe-Zhu 2021-03-22
f6d70a4 Donghe-Zhu 2021-03-22
183443b Donghe-Zhu 2021-03-21
2e6976b Donghe-Zhu 2021-03-21
51a42bd Donghe-Zhu 2021-03-16
f745381 Donghe-Zhu 2021-03-16
aecbf75 Donghe-Zhu 2021-03-14
1b2a0c2 Donghe-Zhu 2021-03-14
6733e48 Donghe-Zhu 2021-03-12
ba71e6a Donghe-Zhu 2021-03-12
9dbf5bd Donghe-Zhu 2021-03-11
a49df30 Donghe-Zhu 2021-03-11
b3348a5 Donghe-Zhu 2021-03-11
1c24ff7 Donghe-Zhu 2021-03-10
94ce5a8 Donghe-Zhu 2021-03-10
db33928 Donghe-Zhu 2021-03-10
3d1f470 Donghe-Zhu 2021-03-10
9b7bc66 Donghe-Zhu 2021-03-10
9d5a62c Donghe-Zhu 2021-03-10
5d1e70b Donghe-Zhu 2021-03-10
2093979 Donghe-Zhu 2021-03-10
cc2a956 Donghe-Zhu 2021-03-10
17f1c4a Donghe-Zhu 2021-03-09
112dea0 Donghe-Zhu 2021-03-08
3fbbfa4 Donghe-Zhu 2021-03-07
8c1e978 Donghe-Zhu 2021-03-05
865f68c Donghe-Zhu 2021-03-05
ee69bc1 Donghe-Zhu 2021-03-05
a79291f Donghe-Zhu 2021-03-05
e8c6f30 Donghe-Zhu 2021-03-04
59288fe Donghe-Zhu 2021-03-04
731abc8 Donghe-Zhu 2021-03-04
e2a5a33 Donghe-Zhu 2021-03-04
c7892c1 Donghe-Zhu 2021-03-04
924430b Donghe-Zhu 2021-03-03
0d0bca1 Donghe-Zhu 2021-03-03
cb63c16 Donghe-Zhu 2021-03-03
89c3e58 Donghe-Zhu 2021-03-03
c911669 Donghe-Zhu 2021-03-03
13666ca Donghe-Zhu 2021-03-01
7a388f7 Donghe-Zhu 2021-03-01
799e913 Donghe-Zhu 2021-03-01
66ff99f Donghe-Zhu 2021-03-01
ac9bb7a Donghe-Zhu 2021-02-28
efdc047 Donghe-Zhu 2021-02-28
e9a7418 Donghe-Zhu 2021-02-28
54d5b5b Donghe-Zhu 2021-02-27
330f064 Donghe-Zhu 2021-02-27
5937141 Donghe-Zhu 2021-02-27
4414bbf Donghe-Zhu 2021-02-27
a265efb Donghe-Zhu 2021-02-27
19edd1e Donghe-Zhu 2021-02-27
f20483f Donghe-Zhu 2021-02-26
6a2c7b3 Donghe-Zhu 2021-02-25
354c224 Donghe-Zhu 2021-02-24
1a0a88a Donghe-Zhu 2021-02-24
5dce4b1 Donghe-Zhu 2021-02-15
4469a0c Donghe-Zhu 2021-02-13
05385dc Donghe-Zhu 2021-02-10
f791ae4 Donghe-Zhu 2021-02-09
f71ae34 Donghe-Zhu 2021-02-09
a145fa7 Donghe-Zhu 2021-02-09
c344e42 Donghe-Zhu 2021-02-08
ca03c39 Donghe-Zhu 2021-02-07
cd7c52c Donghe-Zhu 2021-02-04
bcf84f4 Donghe-Zhu 2021-02-02
865b582 Donghe-Zhu 2021-01-31
3e68089 Donghe-Zhu 2021-01-31
ecf335c Donghe-Zhu 2021-01-31
a618965 Donghe-Zhu 2021-01-31
b50fe52 Donghe-Zhu 2021-01-31
ac99ae5 jens-daniel-mueller 2021-01-29
b5bdcaf Donghe-Zhu 2021-01-29
372adf5 Donghe-Zhu 2021-01-29
af8788e Donghe-Zhu 2021-01-29
21c91c9 Donghe-Zhu 2021-01-29
eded038 Donghe-Zhu 2021-01-29
541d4dd Donghe-Zhu 2021-01-29
6a75576 Donghe-Zhu 2021-01-28
16fba40 Donghe-Zhu 2021-01-28
12bc567 Donghe-Zhu 2021-01-27
342402d Donghe-Zhu 2021-01-27
5bad5c2 Donghe-Zhu 2021-01-27
48f638e Donghe-Zhu 2021-01-25
c1cec47 Donghe-Zhu 2021-01-25
05ffb0c Donghe-Zhu 2021-01-25
8b97165 Donghe-Zhu 2021-01-25
c569946 Donghe-Zhu 2021-01-24
4c28e4a Donghe-Zhu 2021-01-22
24cc264 jens-daniel-mueller 2021-01-22
7891955 Donghe-Zhu 2021-01-21
d4cf1cb Donghe-Zhu 2021-01-21
1f3e5b6 jens-daniel-mueller 2021-01-20
0e7bdf1 jens-daniel-mueller 2021-01-15
4571843 jens-daniel-mueller 2021-01-14
b3564aa jens-daniel-mueller 2021-01-14
8d032c3 jens-daniel-mueller 2021-01-14
fa85b93 jens-daniel-mueller 2021-01-06
e5cb81a Donghe-Zhu 2021-01-05
a499f10 Donghe-Zhu 2021-01-05
fb8a752 Donghe-Zhu 2020-12-23
8fae0b2 Donghe-Zhu 2020-12-21
c8b76b3 jens-daniel-mueller 2020-12-19
rm(GLODAP_vars, GLODAP_vars_long)

9 Individual cruise sections

Zonal and meridional section plots are produce for each cruise individually and are available under:

/nfs/kryo/work/jenmueller/emlr_cant/model/v_XXX/figures/Cruise_sections_histograms/

if (params_local$subsetting == "GLODAP") {
  if (params_local$plot_all_figures == "y") {
    cruises <- GLODAP %>%
      group_by(cruise) %>%
      summarise(date_mean = mean(date, na.rm = TRUE),
                n = n()) %>%
      ungroup() %>%
      arrange(date_mean)
    
    GLODAP <- full_join(GLODAP, cruises)
    
    n <- 0
    for (i_cruise in unique(cruises$cruise)) {
      # i_cruise <- unique(cruises$cruise)[1]
      # n <- n + 1
      # print(n)
      
      GLODAP_cruise <- GLODAP %>%
        filter(cruise == i_cruise) %>%
        arrange(date)
      
      cruises_cruise <- cruises %>%
        filter(cruise == i_cruise)
      
      map_plot <-
        map +
        geom_point(data = GLODAP_cruise,
                   aes(lon, lat, col = date)) +
        scale_color_viridis_c(trans = "date") +
        labs(
          title = paste(
            "Mean date:",
            cruises_cruise$date_mean,
            "| cruise:",
            cruises_cruise$cruise,
            "| n(samples):",
            cruises_cruise$n
          )
        )
      
      
      lon_section <- GLODAP_cruise %>%
        ggplot(aes(lon, depth)) +
        scale_y_reverse() +
        scale_fill_viridis_c()
      
      lon_tco2 <- lon_section +
        stat_summary_2d(aes(z = tco2))
      
      lon_talk <- lon_section +
        stat_summary_2d(aes(z = talk))
      
      lon_phosphate <- lon_section +
        stat_summary_2d(aes(z = phosphate))
      
      lon_oxygen <- lon_section +
        stat_summary_2d(aes(z = oxygen))
      
      lon_aou <- lon_section +
        stat_summary_2d(aes(z = aou))
      
      lon_phosphate_star <- lon_section +
        stat_summary_2d(aes(z = phosphate_star))
      
      lon_nitrate <- lon_section +
        stat_summary_2d(aes(z = nitrate))
      
      lon_cstar <- lon_section +
        stat_summary_2d(aes(z = cstar_tref))
      
      
      lat_section <- GLODAP_cruise %>%
        ggplot(aes(lat, depth)) +
        scale_y_reverse() +
        scale_fill_viridis_c()
      
      lat_tco2 <- lat_section +
        stat_summary_2d(aes(z = tco2))
      
      lat_talk <- lat_section +
        stat_summary_2d(aes(z = talk))
      
      lat_phosphate <- lat_section +
        stat_summary_2d(aes(z = phosphate))
      
      lat_oxygen <- lat_section +
        stat_summary_2d(aes(z = oxygen))
      
      lat_aou <- lat_section +
        stat_summary_2d(aes(z = aou))
      
      lat_phosphate_star <- lat_section +
        stat_summary_2d(aes(z = phosphate_star))
      
      lat_nitrate <- lat_section +
        stat_summary_2d(aes(z = nitrate))
      
      lat_cstar <- lat_section +
        stat_summary_2d(aes(z = cstar_tref))
      
      
      hist_tco2 <- GLODAP_cruise %>%
        ggplot(aes(tco2)) +
        geom_histogram()
      
      hist_talk <- GLODAP_cruise %>%
        ggplot(aes(talk)) +
        geom_histogram()
      
      hist_phosphate <- GLODAP_cruise %>%
        ggplot(aes(phosphate)) +
        geom_histogram()
      
      hist_oxygen <- GLODAP_cruise %>%
        ggplot(aes(oxygen)) +
        geom_histogram()
      
      hist_aou <- GLODAP_cruise %>%
        ggplot(aes(aou)) +
        geom_histogram()
      
      hist_phosphate_star <- GLODAP_cruise %>%
        ggplot(aes(phosphate_star)) +
        geom_histogram()
      
      hist_nitrate <- GLODAP_cruise %>%
        ggplot(aes(nitrate)) +
        geom_histogram()
      
      hist_cstar <- GLODAP_cruise %>%
        ggplot(aes(cstar_tref)) +
        geom_histogram()
      
      (map_plot /
          ((hist_tco2 / hist_talk / hist_phosphate / hist_cstar) |
             (
               hist_oxygen / hist_phosphate_star / hist_nitrate / hist_aou
             )
          )) |
        ((
          lat_tco2 / lat_talk / lat_phosphate / lat_oxygen / lat_aou / lat_phosphate_star / lat_nitrate / lat_cstar
        ) |
          (
            lon_tco2 / lon_talk / lon_phosphate / lon_oxygen /  lon_aou / lon_phosphate_star / lon_nitrate / lon_cstar
          )
        )
      
      ggsave(
        path = paste(
          path_version_figures,
          "Cruise_sections_histograms/",
          sep = ""
        ),
        filename = paste(
          "Cruise_date",
          cruises_cruise$date_mean,
          "count",
          cruises_cruise$n,
          "cruiseID",
          cruises_cruise$cruise,
          ".png",
          sep = "_"
        ),
        width = 20,
        height = 12
      )
      
      rm(
        map_plot,
        lon_section,
        lat_section,
        lat_tco2,
        lat_talk,
        lat_phosphate,
        lon_tco2,
        lon_talk,
        lon_phosphate,
        GLODAP_cruise,
        cruises_cruise
      )
      
    }
    
  }
  
}

10 Write files

if (params_local$subsetting == "GLODAP") {
  # select relevant columns
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  
  GLODAP %>% write_csv(paste(
    path_version_data,
    "GLODAPv2.2020_MLR_fitting_ready.csv",
    sep = ""
  ))
  
}

if (params_local$subsetting == "random") {
  # select relevant columns
  if (params_local$model_resolution == "annual") {
  GLODAP <- GLODAP %>%
    select(
      year,
    #  month,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  }
  
  if (params_local$model_resolution == "month") {
  GLODAP <- GLODAP %>%
    select(
      year,
      month,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      depth,
      gamma,
      gamma_slab,
      params_local$MLR_predictors,
      params_local$MLR_target
    )
  }
  
  GLODAP %>% write_csv(paste(
    path_version_data,
    "GLODAPv2.2020_MLR_fitting_ready.csv",
    sep = ""
  ))
}

co2_atm_tref %>%  write_csv(paste(path_version_data,
                                  "co2_atm_tref.csv",
                                  sep = ""))

sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] kableExtra_1.3.1 knitr_1.30       lubridate_1.7.9  marelac_2.1.10  
 [5] shape_1.4.5      ggforce_0.3.3    metR_0.9.0       scico_1.2.0     
 [9] patchwork_1.1.1  collapse_1.5.0   forcats_0.5.0    stringr_1.4.0   
[13] dplyr_1.0.5      purrr_0.3.4      readr_1.4.0      tidyr_1.1.2     
[17] tibble_3.0.4     ggplot2_3.3.3    tidyverse_1.3.0  workflowr_1.6.2 

loaded via a namespace (and not attached):
 [1] fs_1.5.0                 sf_0.9-8                 gsw_1.0-5               
 [4] RColorBrewer_1.1-2       webshot_0.5.2            httr_1.4.2              
 [7] rprojroot_2.0.2          tools_4.0.3              backports_1.1.10        
[10] R6_2.5.0                 KernSmooth_2.23-18       DBI_1.1.0               
[13] colorspace_2.0-0         withr_2.3.0              tidyselect_1.1.0        
[16] compiler_4.0.3           git2r_0.27.1             cli_2.2.0               
[19] rvest_0.3.6              xml2_1.3.2               labeling_0.4.2          
[22] scales_1.1.1             checkmate_2.0.0          classInt_0.4-3          
[25] digest_0.6.27            rmarkdown_2.5            oce_1.3-0               
[28] pkgconfig_2.0.3          htmltools_0.5.0          highr_0.8               
[31] dbplyr_1.4.4             rlang_0.4.10             readxl_1.3.1            
[34] rstudioapi_0.13          farver_2.0.3             generics_0.1.0          
[37] jsonlite_1.7.2           magrittr_2.0.1           Matrix_1.2-18           
[40] Rcpp_1.0.5               munsell_0.5.0            fansi_0.4.1             
[43] lifecycle_1.0.0          stringi_1.5.3            whisker_0.4             
[46] yaml_2.2.1               MASS_7.3-53              grid_4.0.3              
[49] blob_1.2.1               parallel_4.0.3           promises_1.1.1          
[52] crayon_1.3.4             lattice_0.20-41          haven_2.3.1             
[55] hms_0.5.3                seacarb_3.2.15           pillar_1.4.7            
[58] reprex_0.3.0             glue_1.4.2               evaluate_0.14           
[61] RcppArmadillo_0.10.1.2.2 data.table_1.13.6        modelr_0.1.8            
[64] vctrs_0.3.6              tweenr_1.0.2             httpuv_1.5.4            
[67] testthat_3.0.1           cellranger_1.1.0         gtable_0.3.0            
[70] polyclip_1.10-0          assertthat_0.2.1         xfun_0.20               
[73] broom_0.7.5              RcppEigen_0.3.3.9.1      e1071_1.7-4             
[76] later_1.1.0.1            viridisLite_0.3.0        class_7.3-17            
[79] units_0.6-7              ellipsis_0.3.1           here_1.0.1