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Last updated: 2022-07-04

Checks: 1 1

Knit directory: humanCardiacFibroblasts/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Repository version: 9fc92e5

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 9fc92e5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/humanFibroblast/

Untracked files:
    Untracked:  analysis/integrateAcrossPatientsGZplusSG.Rmd
    Untracked:  figure/integrateAcrossPatientsGZplusSG.Rmd/

Unstaged changes:
    Modified:   analysis/index.Rmd
    Modified:   analysis/mergeHumanSamplesPlusGraz.Rmd
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 0-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 0-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 1-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 1-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 10-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 10-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 11-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 11-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 12-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 12-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 13-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 13-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 14-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 14-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 15-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 15-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 16-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 16-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 17-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 17-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 18-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 18-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 19-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 19-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 2-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 2-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 3-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 3-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 4-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 4-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 5-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 5-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 6-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 6-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 7-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 7-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 8-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 8-1.png
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 9-1.pdf
    Modified:   figure/mergeHumanSamplesPlusGraz.Rmd/top marker 9-1.png
    Modified:   metadata2.txt

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	9fc92e5	mluetge	2022-06-23	add samples from Graz
html	9fc92e5	mluetge	2022-06-23	add samples from Graz
Rmd	70e878c	mluetge	2022-05-02	update grand application plots
html	70e878c	mluetge	2022-05-02	update grand application plots
Rmd	004eedd	mluetge	2022-04-29	vis data for grand app
html	004eedd	mluetge	2022-04-29	vis data for grand app
Rmd	affdfcb	mluetge	2021-11-11	add cw DE henes idcm
html	affdfcb	mluetge	2021-11-11	add cw DE henes idcm
html	8706140	mluetge	2021-09-03	Update index.html
Rmd	cf82798	mluetge	2021-09-03	first merge
html	cf82798	mluetge	2021-09-03	first merge
html	e2b9497	mluetge	2021-09-03	initial commit
Rmd	b27bc0d	mluetge	2021-09-03	Start workflowr project.

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Human Cardiac Fibroblasts - optimize protocols: