Showing docs for version 3.7-0

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MissingReadGroupFilter

Filter out reads without read group information

Category Read Filters

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Overview

Many GATK tools are dependent on having read group information in order to operate correctly. This filter excludes any reads that have not been appropriately identified.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf MissingReadGroup
 

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