Showing docs for version 3.7-0

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Platform454Filter

Filter out reads produced by 454 technology

Category Read Filters

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Overview

Reads produced by 454 technology should not be processed by the GATK's indel realignment tools. This filter is applied by those tools to enforce that rule.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf Platform454
 

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