Allows for reading in RefSeq information
Parses a sorted UCSC RefSeq file (see below) into relevant features: the gene name, the unique gene name (if multiple transcrips get separate entries), exons, gene start/stop, coding start/stop, strandedness of transcription.
Instructions for generating a RefSeq file for use with the RefSeq codec can be found on the documentation guide here http://www.broadinstitute.org/gatk/guide/article?id=1329
-refSeqBinding:REFSEQ /path/to/refSeq.txtYou will need to consult individual walkers for the binding name ("refSeqBinding", above)
76 NM_001011874 1 - 3204562 3661579 3206102 3661429 3 3204562,3411782,3660632, 3207049,3411982,3661579, 0 Xkr4 cmpl cmpl 1,2,0,for more information see here