Showing docs for version 3.7-0

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BaseCounts

Count of A, C, G, T bases across all samples

Category Annotation Modules

VCF Field INFO (variant-level)

Type ActiveRegionBasedAnnotation

Header definition line

INFO=<ID=BaseCounts,Number=4,Type=Integer,Description="Counts of each base">

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Overview

This annotation returns the counts of A, C, G, and T bases across all samples, in that order.

Example:

BaseCounts=3,0,3,0

This means the number of A bases seen is 3, the number of T bases seen is 0, the number of G bases seen is 3, and the number of T bases seen is 0.

Related annotations

• NBaseCount counts the percentage of N bases.

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