Showing docs for version 3.7-0

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NoOriginalQualityScoresFilter

Filter out reads that do not have an original quality quality score (OQ) tag

Category Read Filters

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Overview

The OQ tag can be added during the base recalibration process in order to preserve original information.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf NoOriginalQualityScores
 

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